LOCUS       AM922296                1726 bp    mRNA    linear   HUM 14-DEC-2008
DEFINITION  Homo sapiens mRNA for PDGF-C variant PDGF-Cb (PDGFC gene), isolated
            from fetal brain.
ACCESSION   AM922296
VERSION     AM922296.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Zhao J.
  JOURNAL   Submitted (06-DEC-2007) to the INSDC. Zhao J., Dept of Oncology &
            Pathology, CCK, Karolinska Institute, CCK, R8:05, Karolinska
            Hospital, Stockholm, SE-171 76, SWEDEN.
REFERENCE   2
  AUTHORS   Zhao J., Liu Z., Liu T., Nilsson S., Nister M.
  TITLE     An N-terminally truncated isoform of human PDGF-C regulates the
            secretion of full-length PDGF-C and is deregulated in renal cell
            carcinoma
  JOURNAL   Unpublished.
FEATURES             Location/Qualifiers
     source          1..1726
                     /db_xref="H-InvDB:HIT000500176"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /tissue_lib="the human fetal brain bd marathon-ready cDNA
                     (clontech)"
                     /tissue_type="fetal brain"
                     /db_xref="taxon:9606"
     5'UTR           1..861
                     /gene="PDGFC"
     CDS             862..1410
                     /gene="PDGFC"
                     /product="PDGF-C variant PDGF-Cb"
                     /function="growth factor"
                     /note="PDGF-Cb is an alternatively spliced variant of the
                     human PDGFC gene."
                     /db_xref="GOA:Q9NRA1"
                     /db_xref="H-InvDB:HIT000500176.4"
                     /db_xref="HGNC:HGNC:8801"
                     /db_xref="InterPro:IPR000072"
                     /db_xref="InterPro:IPR000859"
                     /db_xref="InterPro:IPR029034"
                     /db_xref="InterPro:IPR029817"
                     /db_xref="InterPro:IPR035914"
                     /db_xref="UniProtKB/Swiss-Prot:Q9NRA1"
                     /experiment="sequence obtained by RT-PCR from human fetal
                     brain cDNA and confirmed by sequencing; translation start
                     codon confirmed by site-directed mutagenesis"
                     /protein_id="CAP58278.1"
                     /translation="MPQFTEAVSPSVLPPSALPLDLLNNAITAFSTLEDLIRYLEPER
                     WQLDLEDLYRPTWQLLGKAFVFGRKSRVVDLNLLTEEVRLYSCTPRNFSVSIREELKR
                     TDTIFWPGCLLVKRCGGNCACCLHNCNECQCVPSKVTKKYHEVLQLRPKTGVRGLHKS
                     LTDVALEHHEECDCVCRGSTGG"
     3'UTR           1411..1726
                     /gene="PDGFC"
BASE COUNT          486 a          383 c          414 g          443 t
ORIGIN      
        1 cctcattcct ccctcgcctt cacccccacc cccaccactt cgccacagct caggatttgt
       61 ttaaaccttg ggaaactggt tcaggtccag gttttgcttt gatccttttc aaaaactgga
      121 gacacagaag agggctctag gaaaaagttt tggatgggat tatgtggaaa ctaccccgcg
      181 attctctgct gccagagcag gctcggcgct tccaccccag tgcagccttc ccctggcggt
      241 ggtgaaagag actcgggagt cgctgcttcc aaagtgcccg ccgtgagtga gctctcaccc
      301 cagtcagcca aatgagcctc ttcgggcttc tcctgctgac atctgccctg gccggccaga
      361 gacaggggac tcaggcggaa tccaacctga gtagtaaatt ccagttttcc agcaacaagg
      421 aacagaacgg taggaactat atccaagcat ctggactggc atagaaaaga ggagaaagaa
      481 catttaaaag gagtacaaga tcctcagcat gagagaatta ttactgtgtc tactaatgga
      541 agtattcaca gcccaaggtt tcctcatact tatccaagaa atacggtctt ggtatggaga
      601 ttagtagcag tagaggaaaa tgtatggata caacttacgt ttgatgaaag atttgggctt
      661 gaagacccag aagatgacat atgcaagtat gattttgtag aagttgagga acccagtgat
      721 ggaactatat tagggcgctg gtgtggttct ggtactgtac caggaaaaca gatttctaaa
      781 ggaaatcaaa ttaggataag atttgtatct gatgaatatt ttccttctga accagggttc
      841 tgcatccact acaacattgt catgccacaa ttcacagaag ctgtgagtcc ttcagtgcta
      901 cccccttcag ctttgccact ggacctgctt aataatgcta taactgcctt tagtaccttg
      961 gaagacctta ttcgatatct tgaaccagag agatggcagt tggacttaga agatctatat
     1021 aggccaactt ggcaacttct tggcaaggct tttgtttttg gaagaaaatc cagagtggtg
     1081 gatctgaacc ttctaacaga ggaggtaaga ttatacagct gcacacctcg taacttctca
     1141 gtgtccataa gggaagaact aaagagaacc gataccattt tctggccagg ttgtctcctg
     1201 gttaaacgct gtggtgggaa ctgtgcctgt tgtctccaca attgcaatga atgtcaatgt
     1261 gtcccaagca aagttactaa aaaataccac gaggtccttc agttgagacc aaagaccggt
     1321 gtcaggggat tgcacaaatc actcaccgac gtggccctgg agcaccatga ggagtgtgac
     1381 tgtgtgtgca gagggagcac agggggatag ccgcatcacc accagcagct cttgcccaga
     1441 gctgtgcagt gcagtggctg attctattag agaacgtatg cgttatctcc atccttaatc
     1501 tcagttgttt gcttcaagga cctttcatct tcaggattta cagtgcattc tgaaagagga
     1561 gacatcaaac agaattagga gttgtgcaac agctcttttg agaggaggcc taaaggacag
     1621 gagaaaaggt cttcaatcgt ggaaagaaaa ttaaatgttg tattaaatag atcaccagct
     1681 agtttcagag ttaccatgta cgtattccac tagctgggtt ctgtaa
//