LOCUS AM922296 1726 bp mRNA linear HUM 14-DEC-2008 DEFINITION Homo sapiens mRNA for PDGF-C variant PDGF-Cb (PDGFC gene), isolated from fetal brain. ACCESSION AM922296 VERSION AM922296.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1726) AUTHORS Zhao J. JOURNAL Submitted (06-DEC-2007) to the INSDC. Zhao J., Dept of Oncology & Pathology, CCK, Karolinska Institute, CCK, R8:05, Karolinska Hospital, Stockholm, SE-171 76, SWEDEN. REFERENCE 2 AUTHORS Zhao J., Liu Z., Liu T., Nilsson S., Nister M. TITLE An N-terminally truncated isoform of human PDGF-C regulates the secretion of full-length PDGF-C and is deregulated in renal cell carcinoma JOURNAL Unpublished. FEATURES Location/Qualifiers source 1..1726 /db_xref="H-InvDB:HIT000500176" /organism="Homo sapiens" /mol_type="mRNA" /tissue_lib="the human fetal brain bd marathon-ready cDNA (clontech)" /tissue_type="fetal brain" /db_xref="taxon:9606" 5'UTR 1..861 /gene="PDGFC" CDS 862..1410 /gene="PDGFC" /product="PDGF-C variant PDGF-Cb" /function="growth factor" /note="PDGF-Cb is an alternatively spliced variant of the human PDGFC gene." /db_xref="GOA:Q9NRA1" /db_xref="H-InvDB:HIT000500176.4" /db_xref="HGNC:HGNC:8801" /db_xref="InterPro:IPR000072" /db_xref="InterPro:IPR000859" /db_xref="InterPro:IPR029034" /db_xref="InterPro:IPR029817" /db_xref="InterPro:IPR035914" /db_xref="UniProtKB/Swiss-Prot:Q9NRA1" /experiment="sequence obtained by RT-PCR from human fetal brain cDNA and confirmed by sequencing; translation start codon confirmed by site-directed mutagenesis" /protein_id="CAP58278.1" /translation="MPQFTEAVSPSVLPPSALPLDLLNNAITAFSTLEDLIRYLEPER WQLDLEDLYRPTWQLLGKAFVFGRKSRVVDLNLLTEEVRLYSCTPRNFSVSIREELKR TDTIFWPGCLLVKRCGGNCACCLHNCNECQCVPSKVTKKYHEVLQLRPKTGVRGLHKS LTDVALEHHEECDCVCRGSTGG" 3'UTR 1411..1726 /gene="PDGFC" BASE COUNT 486 a 383 c 414 g 443 t ORIGIN 1 cctcattcct ccctcgcctt cacccccacc cccaccactt cgccacagct caggatttgt 61 ttaaaccttg ggaaactggt tcaggtccag gttttgcttt gatccttttc aaaaactgga 121 gacacagaag agggctctag gaaaaagttt tggatgggat tatgtggaaa ctaccccgcg 181 attctctgct gccagagcag gctcggcgct tccaccccag tgcagccttc ccctggcggt 241 ggtgaaagag actcgggagt cgctgcttcc aaagtgcccg ccgtgagtga gctctcaccc 301 cagtcagcca aatgagcctc ttcgggcttc tcctgctgac atctgccctg gccggccaga 361 gacaggggac tcaggcggaa tccaacctga gtagtaaatt ccagttttcc agcaacaagg 421 aacagaacgg taggaactat atccaagcat ctggactggc atagaaaaga ggagaaagaa 481 catttaaaag gagtacaaga tcctcagcat gagagaatta ttactgtgtc tactaatgga 541 agtattcaca gcccaaggtt tcctcatact tatccaagaa atacggtctt ggtatggaga 601 ttagtagcag tagaggaaaa tgtatggata caacttacgt ttgatgaaag atttgggctt 661 gaagacccag aagatgacat atgcaagtat gattttgtag aagttgagga acccagtgat 721 ggaactatat tagggcgctg gtgtggttct ggtactgtac caggaaaaca gatttctaaa 781 ggaaatcaaa ttaggataag atttgtatct gatgaatatt ttccttctga accagggttc 841 tgcatccact acaacattgt catgccacaa ttcacagaag ctgtgagtcc ttcagtgcta 901 cccccttcag ctttgccact ggacctgctt aataatgcta taactgcctt tagtaccttg 961 gaagacctta ttcgatatct tgaaccagag agatggcagt tggacttaga agatctatat 1021 aggccaactt ggcaacttct tggcaaggct tttgtttttg gaagaaaatc cagagtggtg 1081 gatctgaacc ttctaacaga ggaggtaaga ttatacagct gcacacctcg taacttctca 1141 gtgtccataa gggaagaact aaagagaacc gataccattt tctggccagg ttgtctcctg 1201 gttaaacgct gtggtgggaa ctgtgcctgt tgtctccaca attgcaatga atgtcaatgt 1261 gtcccaagca aagttactaa aaaataccac gaggtccttc agttgagacc aaagaccggt 1321 gtcaggggat tgcacaaatc actcaccgac gtggccctgg agcaccatga ggagtgtgac 1381 tgtgtgtgca gagggagcac agggggatag ccgcatcacc accagcagct cttgcccaga 1441 gctgtgcagt gcagtggctg attctattag agaacgtatg cgttatctcc atccttaatc 1501 tcagttgttt gcttcaagga cctttcatct tcaggattta cagtgcattc tgaaagagga 1561 gacatcaaac agaattagga gttgtgcaac agctcttttg agaggaggcc taaaggacag 1621 gagaaaaggt cttcaatcgt ggaaagaaaa ttaaatgttg tattaaatag atcaccagct 1681 agtttcagag ttaccatgta cgtattccac tagctgggtt ctgtaa //