LOCUS AL834134 4244 bp mRNA linear HTC 15-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp667A1711 (from clone DKFZp667A1711).
ACCESSION AL834134
VERSION AL834134.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4244)
AUTHORS Koehrer K., Beyer A., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
CONSRTM The German cDNA Consortium
JOURNAL Submitted (20-JAN-2005) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research
Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by BMFZ (Biomedical Research Center at the
Heinrich-Heine-University, Duesseldorf/Germany) within the cDNA
sequencing consortium of the German Genome Project.
This clone (DKFZp667A1711) is available at the RZPD Deutsches
Ressourcenzentrum fuer Genomforschung GmbH in Berlin, Germany.
Please contact RZPD for ordering:
http://www.rzpd.de/cgi-bin/products/cl.cgi?CloneID=DKFZp667A1711
Further information about the clone and the sequencing project is
available at http://mips.gsf.de/projects/cdna/
FEATURES Location/Qualifiers
source 1..4244
/db_xref="H-InvDB:HIT000028865"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="667 (synonym: hlno2). Vector pSport1; host
DH10B; sites NotI + SalI"
/clone="DKFZp667A1711"
/tissue_type="lymph node"
/note="protocadherin 15, C-terminus truncated"
/db_xref="taxon:9606"
CDS 293..>3160
/codon_start=1
/gene="DKFZp667A1711"
/product="hypothetical protein"
/db_xref="GOA:Q96QU1"
/db_xref="H-InvDB:HIT000028865.17"
/db_xref="HGNC:HGNC:14674"
/db_xref="InterPro:IPR002126"
/db_xref="InterPro:IPR015919"
/db_xref="InterPro:IPR020894"
/db_xref="InterPro:IPR030718"
/db_xref="InterPro:IPR041149"
/db_xref="PDB:4XHZ"
/db_xref="PDB:5T4M"
/db_xref="PDB:5T4N"
/db_xref="PDB:5ULY"
/db_xref="UniProtKB/Swiss-Prot:Q96QU1"
/protein_id="CAD38850.2"
/translation="MFRQFYLWTCLASGIILGSLFEICLGQYDDDCKLARGGPPATIV
AIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLMDPVKQMLFLNSTGRV
LDRDPPMNIHSIVVQVQCINKKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELT
PVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRK
RLNYEDKTRYFVIIQANDRAQNLNERRTTTTTLTVDVLDGDDLGPMFLPCVLVPNTRD
CRPLTYQAAIPELRTPEELNPIIVTPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDY
PRFFHMHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQS
PYFTMPSYQGYILESAPVGATISDSLNLTSPLRIVALDKDIEATKDPELHLFLNDYTS
VFTVTQTGITRYLTLLQPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPT
FPEISYDVYVYTDMRPGDSVIQLTAVDADEGSNGEITYEILVGAQGDFIINKTTGLIT
IAPGVEMIVGRTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLE
ISEAMRVGAVLLNLQATDREGDSITYAIENGDPQRVFNLSETTGILTLGKALDRESTD
RYILIITASDGRPDGTSTATVNIVVTDVNDNAPVFDPYLPRNLSVVEEEANAFVGQVK
ATDPDAGINGQVHYSLGNFNNLFRITSNGSIYTAVKLNREVRDYYELVVVATDGAVHP
RHSTLTLAIKVLDIDDNSPVFTNSTYTVLVEENLPAGTTILQIEAKDVDLGANVSYRI
RSPEVKHFFALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTV
IVKDMNDYPPVFSKQIYKGMVAPDAVKGTPITTVYAEDADPP"
BASE COUNT 1348 a 818 c 842 g 1236 t
ORIGIN
1 aacgtggaga atgatggtat gctttctgag ttaacatgtt gaactgtttt gcttttctaa
61 aaattttcct agtaacattt tcttgatgat atgagagtgg atatcaatgc ctcacagaaa
121 caagaggtgg aacatgtgaa tgaatcgtct tggaactaga ttatgagcac tggttctttt
181 taaagggatg tgcaagaggc agccttggca agaaaacttg ctgcataatc ttacatggac
241 taaagatgaa actttaaacc gcaaatcagc tttgagtgaa ctttgacaga agatgtttcg
301 acagttttat ctctggacat gtttagcttc agggatcatc ctgggctctc tctttgaaat
361 ctgcttgggc cagtatgatg atgattgcaa actagctagg ggaggaccac cagctaccat
421 agttgctatt gatgaagaaa gtcggaatgg tacaattctg gtggacaaca tgctgatcaa
481 agggactgct ggaggaccag accccaccat agaactttct ttaaaggata atgtggatta
541 ctgggtgttg atggatcctg ttaagcaaat gcttttcctg aacagcaccg gaagagttct
601 ggatagagat ccaccgatga acatacactc cattgtggtg caggtccagt gcatcaacaa
661 aaaagtgggc actattatct accatgaagt gcgaatagtg gtgagagaca ggaatgacaa
721 ctcacccact ttcaagcatg aaagctacta tgccacagtg aatgagctca ctccagttgg
781 taccacaata ttcacaggat tttcaggaga caatggagct acagatatag atgatggacc
841 aaatggacag atagagtatg ttattcagta taatccagat gatccgacat ccaatgacac
901 ctttgaaatt cccctaatgt tgactggaaa tatagtgtta aggaagaggc tcaactatga
961 agataagact cgctactttg tcataatcca agctaatgac cgtgcccaaa atctgaatga
1021 gaggcgaacc accaccacca ctctcacagt ggatgttctg gatggagatg acttgggtcc
1081 aatgtttctt ccttgtgtcc ttgtgccaaa cactcgtgat tgccgtccac tcacttatca
1141 agctgccata cctgagttga gaactccgga agaactgaac cccattattg ttacgccacc
1201 aatccaagcc attgatcagg accggaatat tcaaccgcca tcagataggc caggaatcct
1261 ctattccatc cttgttggga ctcctgagga ttacccacga tttttccata tgcatcctag
1321 gacagcagaa cttagtctcc tggagccagt aaacagagac tttcaccaga aatttgattt
1381 ggttattaag gctgaacaag acaatggtca tcctcttcct gcctttgccg gtctacacat
1441 tgaaatactg gatgaaaaca atcaaagtcc atattttaca atgcccagtt atcaaggcta
1501 tatcctggaa tctgccccag tgggagcaac catttcggac agtctcaatt tgacttcacc
1561 tttaagaata gtagctctgg acaaggacat agaagctaca aaagacccag agcttcacct
1621 ttttctgaat gactacacct cagtcttcac cgtcacacag actggtatta ctcgctacct
1681 caccttactt caaccagtgg acagggaaga acagcaaact tacacctttt cgataacagc
1741 atttgatggt gtacaagaaa gtgagccagt catcgtcaat attcaagtga tggatgcaaa
1801 tgataacacg ccaaccttcc ctgaaatatc ctatgatgtg tatgtttata cagacatgag
1861 acctggggac agtgtcatac agctcactgc agtcgacgca gacgaagggt caaatgggga
1921 gatcacatat gaaatccttg ttggggctca gggagacttc atcatcaata aaacaacagg
1981 gcttatcacc atcgctccag gggtggaaat gatagtcggg cggacttacg cactcacggt
2041 ccaagcagcg gataatgctc ctcctgcaga gcgaaggaac tccatctgca ctgtgtatat
2101 tgaagtgctt ccaccaaata atcaaagccc tcctcgcttc ccacagctga tgtatagcct
2161 tgaaattagt gaagccatga gggttggtgc tgttttatta aatctacagg caactgatcg
2221 agagggagac tcaataacat atgccattga gaatggagat cctcagagag tttttaatct
2281 ttcagaaacc acggggattc taaccttagg gaaagcactg gacagggaaa gcactgatcg
2341 ctacattctg atcatcacag cttcagatgg caggccagat gggacctcaa ctgccacagt
2401 aaacatagtg gtgacagatg tcaatgacaa tgctccagtg tttgatcctt atctgccaag
2461 aaatttatct gtggtggaag aagaagccaa tgcctttgtg ggtcaagtaa aagcaacaga
2521 ccctgatgct ggaataaatg gtcaagtgca ctacagtttg ggtaacttta ataatctttt
2581 tcgtatcaca tccaatggga gcatttacac agcagtgaag cttaacagag aagtcaggga
2641 ctactatgaa cttgttgttg tggcaacaga tggagcagta caccctcgtc attcaactct
2701 aaccttggcc atcaaggttt tggacattga tgataacagt cctgtgttca ccaattcaac
2761 atacactgtc cttgttgaag agaatttgcc agctgggact accatccttc aaatagaggc
2821 caaagatgtc gaccttggag caaatgtgtc ttaccggata agaagcccag aagtgaagca
2881 cttttttgca ctacatccat ttacaggaga actatcgctt ttaaggagtt tagattatga
2941 ggcatttcca gaccaagaag caagtatcac ttttctggta gaggcctttg atatttatgg
3001 aacaatgcca cctggtattg ctactgtcac agtgattgta aaggatatga atgattatcc
3061 tcctgtcttt agtaaacaaa tatacaaagg gatggtggct ccggatgcag tcaagggtac
3121 acctatcaca acagtttatg ctgaagatgc agaccctcct gtaagtagaa ggcattgatt
3181 aatattctga actgtactga gaaaaatcct taacactcat aaatgaccga atcacaagac
3241 agcaaaagta gtctctgtaa atttcaccct atttattcat acattttatg ttcttttact
3301 tatttcatcc acaggtacag agcatatttc aaatgactat tattgaacct agacaaagaa
3361 tatgcttttt gtttttctag aatgcacaat gtactaatta ctaatttatc taacaatgat
3421 aaatatatat gaattgtctc catttgtaag cttcacttaa tctggatatg ttttaaattt
3481 atgtattttc cactgtatgc atatatgact attttgttag caaactccaa atcaacatat
3541 cacatgaaac ttatattgaa tgtgtttatt ttggtaaatt aaaaagctta agattgctta
3601 cagaaaatag ttaacattct tttatcatgt agaactttac ttttttgaga tatcccaaat
3661 tatctttcaa ggcaaggttt taattaaaat attattatag tgagagtgat aaaataccat
3721 gtataattaa tagtatacat ataaaaaagc tttctataaa taccttgttt tataaatatt
3781 aattattatc ctgatggttt aaatttttct ctgagtgggc tcacactgta agttggtggc
3841 tgataaattt tagaaaaata caaataaaag ttaaatgaac tattttagaa gagtaagaaa
3901 ataaaatcct gaatcttata agtgatttag aagttctgtt ttctattgct aatataaata
3961 gtatttcttt taatgcttgt atttaattaa aagtgaatga ccatcataac atttttcagc
4021 ttcgatttgg acaagtctta taaactctat tgtgactata tggaatcaaa atgtattaat
4081 gttaatatga aagtggtggg ctttaattca gaagctcctt ttcttaagtg tgttaaaatg
4141 tctttgaaac tgctttattg tgctttggga tatatgatag gcaaaaattt catagacttg
4201 aacccatcaa taaagatagt gaatgtgaaa aaaaaaaaaa aaaa
//