LOCUS AL832647 5525 bp mRNA linear HUM 15-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp451M2318 (from clone DKFZp451M2318).
ACCESSION AL832647
VERSION AL832647.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5525)
AUTHORS Ansorge W., Krieger S., Regiert T., Rittmueller C., Schwager B.,
Mewes H.W., Weil B., Amid C., Osanger A., Fobo G., Han M.,
Wiemann S.
JOURNAL Submitted (16-JUN-2003) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by EMBL (European Molecular Biology Laboratories,
Heidelberg/Germany) within the cDNA sequencing consortium of
the German Genome Project.
This clone (DKFZp451M2318) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://mips.gsf.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..5525
/db_xref="H-InvDB:HIT000027559"
/organism="Homo sapiens"
/map="9q21.13"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="451 (synonym: hlcc1). Vector pSport1; host
DH10B; sites NotI + SalI"
/clone="DKFZp451M2318"
/tissue_type="human spinal cord"
/db_xref="taxon:9606"
CDS join(484..1590,1590..1628,1628..1768)
/codon_start=1
/gene="DKFZp451M2318"
/product="hypothetical protein"
/note="beta-1,3-galactosyl-O-glycosyl-glycoprotein"
/note="The frame shift was determined manually"
/db_xref="GOA:Q86T81"
/db_xref="H-InvDB:HIT000027559.18"
/db_xref="InterPro:IPR003406"
/db_xref="UniProtKB/TrEMBL:Q86T81"
/protein_id="CAD89956.1"
/translation="MLRTLLRRRLFSYPTKYYFMVLVLSLITFSVLRIHQKPEFVSVR
HLELAGENPSSDINCTKVLQGDVNEIQKVKLEILTVKFKKRPRWTPDDYINMTSDCSS
FIKRRKYIVEPLSKEEAEFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDTKSED
SYLAAVMGIASCFSNVFVASRLESVVYASWSRVQADLNCMKDLYAMSANWKYLINLCG
MDFPIKTNLEIVRKLKLLMGENNLETERMPSHKEERWKKRYEVVYGKLTNTGTVKMLP
PLETPLFSGSAYFVVSREYVGYVLQNEKIQKLMEWAQDTYSPDEYLWATIQRIPEVPG
SLPASHKYDLSDMQAVARFVKWQYFEGDVSKGAPYPPCDGVHVRSVCIFGAGDLNWML
RKHHLFANKFDVDVDLFAIQCLDEHLRHKALETLKH"
regulatory 5490..5495
/regulatory_class="polyA_signal_sequence"
polyA_site 5513
BASE COUNT 1669 a 1040 c 1143 g 1673 t
ORIGIN
1 gcgcggggcg ggagcttggt ggagcaggag cggctgggca tcctcctgag actccggggt
61 cagacgccca ctccagcgct ttctgcgcag cacaggcacc ctcgcctgtc acgcctccct
121 ctcctcttcc cgtctcccag cgtggatgag ggcgcctgca gatcccggct agggcacgga
181 ccgcctaggc cgagatttct ttaaagcctc gtgcagcaca tcattatcgc tggatgcccg
241 gacatgtaat acacctgaca gcatgtgaag tgctcagaat ggggcaggat gtcacctgga
301 atcagcacta agtgattcag actttcctta cttttaaatg tgctgctctt catttcaaga
361 tgccgttgca gctctgataa atgcaaactg acaaccttca aggccacgac ggagggaaaa
421 tcattggtgc ttggagcata gaagactgcc cttcacaaag gaaatccctg attattgttt
481 gaaatgctga ggacgttgct gcgaaggaga cttttttctt atcccaccaa atactacttt
541 atggttcttg ttttatccct aatcaccttc tccgttttaa ggattcatca aaagcctgaa
601 tttgtaagtg tcagacactt ggagcttgct ggggagaatc ctagtagtga tattaattgc
661 accaaagttt tacagggtga tgtaaatgaa atccaaaagg taaagcttga gatcctaaca
721 gtgaaattta aaaagcgccc tcggtggaca cctgacgact atataaacat gaccagtgac
781 tgttcttctt tcatcaagag acgcaaatat attgtagaac cccttagtaa agaagaggcg
841 gagtttccaa tagcatattc tatagtggtt catcacaaga ttgaaatgct tgacaggctg
901 ctgagggcca tctatatgcc tcagaatttc tattgcattc atgtggacac aaaatccgag
961 gattcctatt tagctgcagt gatgggcatc gcttcctgtt ttagtaatgt ctttgtggcc
1021 agccgattgg agagtgtggt ttatgcatcg tggagccggg ttcaggctga cctcaactgc
1081 atgaaggatc tctatgcaat gagtgcaaac tggaagtact tgataaatct ttgtggtatg
1141 gattttccca ttaaaaccaa cctagaaatt gtcaggaagc tcaagttgtt aatgggagaa
1201 aacaacctgg aaacggagag gatgccatcc cataaagaag aaaggtggaa gaagcggtat
1261 gaggtcgttt atggaaagct gacaaacaca gggactgtca aaatgcttcc tccactcgaa
1321 acacctctct tttctggcag tgcctacttc gtggtcagta gggagtatgt ggggtatgta
1381 ctacagaatg aaaaaatcca aaagttgatg gagtgggcac aagacacata cagccctgat
1441 gagtatctct gggccaccat ccaaaggatt cctgaagtcc cgggctcact ccctgccagc
1501 cataagtatg atctgtctga catgcaagca gttgccaggt ttgtcaagtg gcagtacttt
1561 gagggtgatg tttccaaggg tgctccctac cgccctgcga tggagtccat gtgcgctcag
1621 tgtgcatttc ggagctggtg acttgaactg gatgctgcgc aaacaccact tgtttgccaa
1681 taagtttgac gtggatgttg acctctttgc catccagtgt ttggatgagc atttgagaca
1741 caaagctttg gagacattaa aacactgacc attacgggca attttatgaa caagaagaag
1801 gatacacaaa acgtaccctt atctgtttcc ccttccttgt cagcgtcggg aagatggtat
1861 gaagtcctct ttggggcagg gactctagta gatcttcttg tcagagaagc tgcatggttt
1921 ctgcagagca cagttagcta gaaaggtgat agcattaaat gttcatctag agttaatagt
1981 gggaggagta aaggtagcct tgaggccaga gcaggtagca aggcattgtg gaaagagggg
2041 accagggtgg ctggggaaga ggccgatgca taaagtcagc ctgttcaaag tgctcaggga
2101 cttagcaaaa tgagaagatg tgacctgtgc caaaactatt ttgagaattt taaatgtgac
2161 catttttctg gtatgaataa acttacagca acaaataatc aaagatacaa ttaatctgat
2221 attatatttg ttgaaataga aatttgattg tactataaat gatttttgta aataatttat
2281 attctgctct aatactgtac tgtgtagtgt gtctccgtat gtcatctcag ggagcttaaa
2341 atgggcttga tttaacattg tttttgtgtt atttttgctt gaaacaacgc acacattttc
2401 aacaaccaaa aaatgacaat ttctagttta gttaatttct acaaatcatc ttatgttatt
2461 agcaaggtta agacatcttt tttaaaaaaa ttatagcttc taccaagaga aacactcaat
2521 ttttctagag atttgcctct atcttccttt cctcagtctt cccagactgc tatcaagctg
2581 tgtaaaaatt tactttcact ggaccctaaa ttattgtctc tgctatctga ctgccagtaa
2641 ttagtgcaga aaactaagac aggatgatac aggtttgagg ggctggggag tgggaggggg
2701 gagaaaagga atgtatttaa acaatttccg atgcccatga tgagtttaaa aaccagcatt
2761 gacaccatcc ccaaaattaa ggctgtcgct tattgaatcc acttgtgtcc aacctcccag
2821 gattgtttta tcctaatgtc acctgtatat tcatttgaaa ggacttggcc ctgttcttgg
2881 gtcttcccgt tacctgcccc ctgggtggta agtttcctcc tttctcaacc ttccacgagg
2941 aggaaagaag tgtgcagtca ttccacatgg cctgttggaa ggcctgggga gggaactttg
3001 ggtttgggac agattttttt ttttgttttt ggtatcattc acagcatacg atttttactc
3061 tctccatctt caccataaga cagataattt ggggttgcta taatgctgtc acacatctca
3121 aagtacattc aaatcttaaa aagaaattct cgtacttttg ccatgttgat actgttcagc
3181 aaacaagcta ccaggaactg tgaggctttg tcatttagca ttagacttta aacaagaatt
3241 aaaatcatgt gctgtatttt taaaatctag ccaaattaaa tagtacatga gaaattcaga
3301 gtattagaca gttttaaggc attcaactga gaaaacttta tttgtcaaag tcagaaaaca
3361 ttttcatctt attgagagat atgtttttaa acttttatca tcatttgtaa atgtggaagt
3421 tggtggattg ctgtgttttt gcatgattag catgggagtc tgttggagca agaggaacat
3481 gcttgttttg aaaactcgag atgatgaggg tggtacatgc agtgtgttct ctctttattg
3541 gcttctaaac cagttttgtc ctttaatgca tgtcaaatat ttctcccatg cttctcttag
3601 cagaaaagtt tttacctata agacagggca ccttttaact ctaaaactag tgatactcag
3661 tgacatagac tttgtcttat aaacattttt tcatttttta ttttgaaaaa ttgcaaatct
3721 acagcaaaag taaaacagta gagtgaacac catgtaaccc tcacctggtg ttaacattgt
3781 accctatttg ctttaagttg tatgtatttc tgaacttggc aaaattggaa attaaaattt
3841 ttaaaaatta caaatataca aagttattta tcttagcaca tttattatgt gtgactgcat
3901 ctgatttata tttaaattgg caggttttga gggatttttt tcttcatcat aaatgtaaac
3961 ataggatttt agagtctatt tccccaagcg ccacattata actgtaaact taccatcttc
4021 tatgtagctg tgatatctca tctttctaaa atggaacttg ttaaaaagtg ttcaaacact
4081 atccctaatg cctgcggcag aatttatata cgatccattc attggggctc aaagtatctt
4141 ttagactttt aaggacaatt tacagcaaat gaaatttatg atgctgtgac aagaaattta
4201 aagaatcaaa acgatggttt gaaaaggaaa cctatgatac atgcaggaga agcaaaaccc
4261 aagtgatttg tgagaaatat agaaattatt taaattactt tatagtaatt attaaacact
4321 aatttttgta ctgtcattga aggtgtttta tagagaaatc tgagaaatca cattcacaaa
4381 ttagaagtca aacatggcca ggcacagtgg ctcacacctg taatcttcag gatttcaaga
4441 ccagcctagc caacatgacg aaaccccatc tctactgaaa atagaaaaaa aaattagcca
4501 ggcttgcacc tgtaatccca gttacctggg aggctgaggc aggagaatct cttgagccca
4561 ggaggcggag gttgcagtga gctgagatgc caccaccaca ccagcctggg tgacagagtg
4621 aaactcgtat ctccaaacaa acaaacaaaa agtccttaaa catatgtgaa caaaaatttt
4681 gtgatggaag gattctagtt aatgagtatt gcatcaagat ttacatcttt cttactaagg
4741 aaaagagtta ataaaaattg ttctttattt tacaggcagt tactgaggct cttcccagat
4801 ctcagtaaac agccactcag ccttgaaaat ggagtgttgt tgtttctaaa catatattta
4861 tgtcatttat taagtacagt tcacttaaat aacataagta gattttctct tgtagtgatt
4921 tgggtaggaa gaggccatgt ttcagttcgt tttctctgta gggtcgattg aattggacct
4981 tttcagttgt tcagaaaaat aaaaataatt tctcatatta aatacagacg ctcctcaact
5041 tatgatgtgg gtaggtccca gtaaacccat tataatttga aaatatcata ttgaaaatgc
5101 atttaatatc tcttacctga aatcataact tagccaagcc taccttaaat gttctcagaa
5161 catttagcct gcagttgggc aaaaccattt aacacaaagc ctattttata atgaagtgtt
5221 gaatagctca tgttatttac tgaatactgt tgtgaaagtg aaaaacaatg attgtatggg
5281 tactcaaagt ataatttcta ctgaatgcat atcacttgtg cactgttgta aagctgaaaa
5341 accgttaagc ctctacgatt tttaagtaag ttggggacca tcagtttaaa ataaatgcaa
5401 tactatttca tgataaacat ggtcactgta agttttactc ttttgaatga gggtgcgaca
5461 gaatgcagtt agaatcagtt catatcacca ttaaaatcat ccattcagaa accaaaaaaa
5521 aaaaa
//