LOCUS AL157954 6203 bp mRNA linear HUM 15-OCT-2008
DEFINITION Novel human mRNA from chromosome 1, clone Z98884, has homology to
PERIOD CIRCADIAN PROTEIN 3.
ACCESSION AL157954
VERSION AL157954.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6203)
AUTHORS Rhodes S., Huckle E.
JOURNAL Submitted (23-FEB-2000) to the INSDC. E-mail contact:
humquery@sanger.ac.uk
COMMENT This cDNA sequence was assembled from public domain ESTs and single
pass sequencing reads from expressed DNA templates, aligned to the
genomic DNA sequence from the bacterial clone 467L1 (Z98884).
The EST sequences listed match this sequence with an identity
of at least 95% between the coordinates shown.
Further information can be found at
http://www.sanger.ac.uk/HGP/Chr1/
Experimentally determined gene
Sanger Centre name : dJ467L1.C1.3
FEATURES Location/Qualifiers
source 1..6203
/db_xref="H-InvDB:HIT000250317"
/organism="Homo sapiens"
/chromosome="1"
/map="1p36.21-36.33"
/mol_type="mRNA"
/db_xref="taxon:9606"
exon 1..303
/number=1
CDS 176..3781
/product="hypothetical protein"
/db_xref="GOA:P56645"
/db_xref="H-InvDB:HIT000250317.14"
/db_xref="HGNC:HGNC:8847"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR013655"
/db_xref="InterPro:IPR015524"
/db_xref="InterPro:IPR022728"
/db_xref="InterPro:IPR035965"
/db_xref="UniProtKB/Swiss-Prot:P56645"
/protein_id="CAB76084.1"
/translation="MPRGEAPGPGRRGAKDEALGEESGERWSPEFHLQRKLADSSHSE
QQDRNRVSEELIMVVQEMKKYFPSERRNKPSTLDALNYALRCVHSVQANSEFFQILSQ
NGAPQADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQAALILNRKKD
VLASSHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAARYECAPVKPFFCRIRGGED
RKQEKCHSPFRIIPYLIHVHHPAQPELESEPCCLTVVEKIHSGYEAPRIPVNKRIFTT
THTPGCVFLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPP
FEHSPIRFCTQNGDYIILDSSWSSFVNPWSRKISFIIGRHKVRTSPLNEDVFATKIKK
MNDNDKDITELQEQIYKLLLQPVHVSVSSGYGSLGSSGSQEQLVSIASSSEASGHRVE
ETKAEQMTLQQVYASVNKIKNLGQQLYIESMTKSSFKPVTGTRTEPNGGGECKTFTSF
HQTLKNNSVYTEPCEDLRNDEHSPSYQQINCIDSVIRYLKSYNIPALKRKCISCTNTT
SSSSEEDKQNHKADDVQALQAGLQIPAIPKSEMPTNGRSIDTGGGAPQILSTAMLSLG
SGISQCGYSSTIVHVPPPETARDATLFCEPWTLNMQPAPLTSEEFKHVGLTAAVLSAH
TQKEEQNYVDKFREKILSSPYSSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHK
RKKLPEPPDSSSSNTGSGPRRGAHQNAQPCCPSAASSPHTSSPTFPPAAMVPSQAPYL
VPAFPLPAATSPGREYAAPGTAPEGLHGLPLSEGLQPYPAFPFPYLDTFMTVFLPDPP
VCPLLSPSFLPCPFLGATASSAISPSMSSAMSPTLDPPPSVTSQRREEEKWEAQSEGH
PFITSRSSSPLQLNLLQEEMPRPSESPDQMRRNTCPQTEYCVTGNNGSESSPATTGAL
STGSPPRENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMGL
PPSRTPSHPTATVLSTGSPPSESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQ
DVQKKETFPNVAEEPIWRMIRQTPERILMTYQVPERVKEVVLKEDLEKLESMRQQQPQ
FSHGQKEELAKVYNWIQSQTVTQEIDIQACVTCENEDSADGAATSCGQVLVEDSC"
exon 304..449
/number=2
misc_feature complement(join(386..565,566..696,705..721))
/note="matches EST AI018784 from clone IMAGE:1639049"
exon 450..565
/number=3
exon 566..767
/number=4
misc_feature complement(682..769)
/note="matches EST AI417912 from clone IMAGE:2112692"
exon 768..816
/number=5
exon 817..965
/number=6
exon 966..1044
/number=7
exon 1045..1151
/number=8
exon 1152..1308
/number=9
exon 1309..1414
/number=10
exon 1415..1543
/number=11
misc_feature join(1542..1632,1631..1679)
/note="matches EST H37988 from clone 191599"
exon 1544..1673
/number=12
exon 1674..1809
/number=13
exon 1810..1934
/number=14
exon 1935..2108
/number=15
exon 2109..2339
/number=16
exon 2340..3037
/number=17
misc_feature complement(2546..2958)
/note="matches EST AA594945 from clone IMAGE:1103135"
misc_feature join(2709..2797,2804..3119)
/note="matches EST AA160470 from clone 632399"
misc_feature join(2788..3018,3019..3037,3036..3087,3300..3400)
/note="matches EST AL047220 from clone DKFZp586H0418,"
exon 3038..3362
/number=18
exon 3363..3546
/number=19
exon 3547..3697
/number=20
misc_feature complement(3581..3617)
/note="matches EST W22382"
misc_feature 3681..3933
/note="matches EST AA364758"
exon 3698..6203
/number=21
misc_feature complement(4113..4482)
/note="matches EST AA521459 from clone IMAGE:826218"
misc_feature complement(4285..4527)
/note="matches EST AA609506 from clone 1031625"
misc_feature 4507..4968
/note="matches EST AA232848 from clone 666629"
misc_feature 4507..4893
/note="matches EST AA233745 from clone 666682"
misc_feature 4507..4822
/note="matches EST W02309 from clone 291945"
misc_feature complement(join(4514..4740,4727..4988))
/note="matches EST AA233746 from clone 666682"
misc_feature 4538..4849
/note="matches EST AA453675 from clone 813639"
misc_feature complement(join(4548..4650,4825..4988))
/note="matches EST N24618 from clone 267318"
misc_feature complement(4603..4986)
/note="matches EST AA447743 from clone 813639"
misc_feature complement(4606..4988)
/note="matches EST AA233260 from clone 666629"
misc_feature complement(4617..4988)
/note="matches EST AA463887 from clone 812644"
misc_feature complement(4702..5005)
/note="matches EST AA479181 from clone 754056"
misc_feature complement(join(5234..5332,4945..5248))
/note="matches EST AA862192 from clone IMAGE:1385760"
misc_feature 5007..5375
/note="matches EST F06409 from clone c-17d02."
misc_feature join(5162..5547,5547..5585,5583..5620)
/note="matches EST AA194122 from clone 665657"
misc_feature 5185..5268
/note="matches EST AA290700 from clone IMAGE:700395"
misc_feature 5193..5470
/note="matches EST N42836 from clone 271060"
misc_feature 5237..5608
/note="matches EST AA481091 from clone IMAGE:814643"
misc_feature 5244..5573
/note="matches EST F12270 from clone c-37h02."
misc_feature join(5284..5322,5321..5620)
/note="matches EST T64848 from clone 22148"
misc_feature 5344..5836
/note="matches EST AA418498 from clone 767257"
misc_feature 5344..5598
/note="matches EST AA235407 from clone 668729"
misc_feature join(5344..5366,5367..5818)
/note="matches EST AA479471 from clone 753958"
misc_feature 5354..5735
/note="matches EST N28714 from clone 266731"
misc_feature join(5392..5670,5665..5741,5753..5798)
/note="matches EST W90190 from clone 418091"
misc_feature 5433..5653
/note="matches EST N78269 from clone 248621"
misc_feature 5446..5620
/note="matches EST R08704 from clone 127790"
misc_feature complement(5478..5928)
/note="matches EST AW274261 from clone IMAGE:2814447"
misc_feature 5522..5686
/note="matches EST N99418 from clone 289353"
misc_feature complement(join(5655..5775,5832..6196))
/note="matches EST AA418401 from clone 767257"
misc_feature complement(5670..6203)
/note="matches EST AW024478 from clone IMAGE:2526019"
misc_feature complement(5694..6203)
/note="matches EST AW268380 from clone IMAGE:2816569"
misc_feature complement(join(5720..5780,5831..6183))
/note="matches EST AA161496 from clone 632399"
misc_feature complement(5739..6198)
/note="matches EST AI380787 from clone IMAGE:2107763"
misc_feature complement(5745..6193)
/note="matches EST AI375109 from clone IMAGE:2063356"
misc_feature complement(5754..6202)
/note="matches EST AI638270 from clone IMAGE:2240557"
misc_feature complement(5779..6198)
/note="matches EST AI915642 from clone IMAGE:2370763"
misc_feature complement(join(5779..5823,5838..6202))
/note="matches EST AA745060 from clone IMAGE:1131984"
misc_feature complement(5780..6203)
/note="matches EST AI393613 from clone IMAGE:2111874"
misc_feature complement(5803..6203)
/note="matches EST AI311412 from clone IMAGE:1915655"
misc_feature complement(5805..6203)
/note="matches EST AI221829 from clone IMAGE:1843842"
misc_feature complement(5823..6202)
/note="matches EST N34471 from clone 271132"
misc_feature complement(5825..6203)
/note="matches EST AW273528 from clone IMAGE:2762709"
misc_feature complement(5830..6194)
/note="matches EST W56229 from clone 321046"
misc_feature complement(5832..6203)
/note="matches EST AA290591 from clone IMAGE:700395"
misc_feature 5834..6072
/note="matches EST AL135686 from clone DKFZp762O084"
misc_feature complement(5838..6202)
/note="matches EST AA682454 from clone 450616"
misc_feature complement(5842..6203)
/note="matches EST AI094271 from clone IMAGE:1689551"
misc_feature complement(5844..6203)
/note="matches EST AA992403 from clone IMAGE:1620444"
misc_feature complement(5954..6203)
/note="matches EST R39122 from clone 26785"
BASE COUNT 1669 a 1491 c 1354 g 1689 t
ORIGIN
1 ggaaaagctc ctcggagatg agcgtgaccc cctggctcgt ggtggccgcc tgttctcact
61 aacgccatgg cggggaccgg agtgagaaac cggtgtctgt cactgactgc aaagtgagcg
121 agaagcaggc tgcgggccgt cccagcacga cgtggagccc cgcggagacc tcgagatgcc
181 ccgcggggaa gctcctggcc ccgggagacg gggggctaag gacgaggccc tgggcgaaga
241 atcgggggag cggtggagcc ccgagttcca tctgcagagg aaattggcgg acagcagcca
301 cagtgaacag caagatcgaa acagagtttc tgaagaactt atcatggttg tccaagaaat
361 gaaaaaatac ttcccctcgg agagacgcaa taaaccaagc actctagatg ccctcaacta
421 tgctctccgc tgtgtccaca gcgttcaagc aaacagtgag tttttccaga ttctcagtca
481 gaatggagca cctcaggcag atgtgagcat gtacagtctt gaggagctgg ccactatcgc
541 ttcagaacac acttccaaaa acacagatac ctttgtggca gtattttcat ttctgtctgg
601 aaggttagtg cacatttctg aacaggctgc tttgatcctg aatcgtaaga aagatgtcct
661 ggcgtcttct cactttgttg acctgcttgc acctcaagac atgagggtat tctacgcgca
721 cactgccaga gctcagcttc ctttctggaa caactggacc caaagagctg cacggtatga
781 atgtgctccg gtgaaacctt ttttctgcag gatccgtgga ggtgaagaca gaaagcaaga
841 gaagtgtcac tccccattcc ggatcatccc ctatctgatt catgtacatc accctgccca
901 gccagaattg gaatcggaac cttgctgtct cactgtggtt gaaaagattc actctggtta
961 tgaagctcct cggatcccag tgaataaaag aatcttcacc accacacaca ccccagggtg
1021 tgtttttctt gaagtagatg aaaaagcagt gcctttgctg ggttacctac ctcaggacct
1081 gattggaaca tcgatcctaa gctacctgca ccctgaagat cgttctctga tggttgccat
1141 acaccaaaaa gttttgaagt atgcagggca tcctcccttt gaacattctc ccattcgatt
1201 ttgtactcaa aacggagact acatcatact ggattccagt tggtccagct ttgtgaatcc
1261 ctggagccgg aagatttctt tcatcattgg tcggcataaa gttcgaacga gcccactaaa
1321 tgaggatgtt tttgctacca aaattaaaaa gatgaacgat aatgacaaag acataacaga
1381 attacaagaa caaatttaca aacttctctt acagccagtt cacgtgagcg tgtccagcgg
1441 ctacgggagc ctggggagca gcgggtcgca ggagcagctt gtcagcatcg cctcctccag
1501 tgaggccagt gggcaccgtg tggaggagac gaaggcggag cagatgacct tgcagcaggt
1561 ctatgccagt gtgaacaaaa ttaaaaatct gggtcagcag ctctacattg agtcaatgac
1621 caaatcatca ttcaagccag tgacggggac acgcacagaa ccgaatggtg gtggtgaatg
1681 taagaccttt acttccttcc accaaacact gaaaaacaat agtgtgtaca ctgagccctg
1741 tgaggatttg aggaacgatg agcacagccc atcctatcaa cagatcaact gtatcgacag
1801 tgtcatcaga tacctgaaga gctacaacat tccagctttg aaaagaaagt gtatctcctg
1861 tacaaataca acttcttcct cctcagaaga agacaaacag aaccacaagg cagatgatgt
1921 ccaagcctta caagctggtt tgcaaatccc agccatacct aaatcagaaa tgccaacaaa
1981 tggacggtcc atagacacag gaggaggagc tccacagatc ctgtccacgg cgatgctgag
2041 cttggggtcg ggcataagcc aatgcggtta cagcagcacc attgtccatg tcccaccccc
2101 agagacagcc agggatgcta ccctcttctg tgagccctgg accctgaaca tgcagccagc
2161 ccctttgacc tcggaagaat ttaaacacgt ggggctcaca gcggctgttc tgtcagcgca
2221 cacccagaag gaagagcaga attatgttga taaattccga gaaaagatcc tgtcatcacc
2281 ctacagctcc tatcttcagc aagaaagcag gagcaaagct aaatattcat attttcaagg
2341 agattctact tccaagcaga cgcggtcggc cggctgcagg aaagggaagc acaagcggaa
2401 gaagctgccg gagccgccag acagcagcag ctcgaacacc ggctctggtc cccgcagggg
2461 agcgcatcag aacgcacagc cctgctgccc ctccgcggcc tcctctccgc acacctcgag
2521 cccgaccttc ccacctgccg ccatggtgcc cagccaggcc ccttacctcg tcccagcttt
2581 tcccctccca gccgcgacct cacccggaag agaatacgca gcccccggaa ctgcaccgga
2641 aggcctgcat gggctgccct tgtccgaggg cttgcagcct tacccagctt tcccttttcc
2701 ttacttggat acttttatga ccgttttcct gcctgacccc cctgtctgtc ctctgttgtc
2761 gccatcgttt ttgccatgtc cattcctggg ggcgacagcc tcttctgcga tatcaccctc
2821 aatgtcgtca gcaatgagtc caactctgga cccaccccct tcagtcacca gccaaaggag
2881 agaggaggaa aagtgggagg cacaaagcga ggggcacccg ttcattactt cgagaagcag
2941 ctcacccttg cagttaaact tacttcagga agagatgccc agaccctctg aatctccaga
3001 tcagatgaga aggaacacgt gcccacaaac tgagtattgt gttacaggca acaatggcag
3061 tgagagcagt cctgctacta ccggtgcact gtccacgggg tcacctccca gggagaatcc
3121 atcccatcct actgccagcg ctctgtccac aggatcgcct cccatgaaga atccatccca
3181 tcctactgcc agcgctctgt ccacaggatc gcctcccatg aagaatccat cccatcctac
3241 tgccagcaca ctgtccatgg gattgcctcc cagcaggact ccatcccatc ctactgccac
3301 tgttctgtcc acggggtcac ctcccagcga atccccatcc agaactggtt cagcagcatc
3361 aggaagcagc gacagcagta tataccttac tagtagtgtt tattcttcta aaatctccca
3421 aaatgggcag caatctcagg acgtacagaa aaaagaaaca tttcctaatg tcgccgaaga
3481 gcccatctgg agaatgatac ggcagacacc tgagcgcatt ctcatgacat accaggtacc
3541 tgagagggtt aaagaagttg tactaaaaga agacctggaa aagctagaaa gtatgaggca
3601 gcagcagccc cagttttctc atgggcaaaa ggaggagctg gctaaggtgt ataattggat
3661 tcaaagccag actgtcactc aagaaatcga cattcaagcc tgtgtcactt gtgaaaatga
3721 agattcagct gatggtgcgg ccacatcctg tggtcaggtt ctggtagaag acagctgttg
3781 agtgactgtg aggatgaacc ttcataccct ttccaagacg tgttacacag acagaccttt
3841 ttaagtcctg gacttttaaa tgaccatgaa gttatcattg aatgttaaga ttttttcttc
3901 ttgatttttt aatacacgta atctttttga agcagacatt gtatacagaa tcttacttct
3961 ctttgttcct gatatattaa aatggccagt taggctcttt ttgtagttga attgtcttct
4021 aaagagattg gatggcctct aaagaggtat gtgtatcttt atttcagatg tcacccagag
4081 taaattataa ttagaagtat agctagaatg agccccaaac cttagcctca tttattttgt
4141 tctgttacat aagtcatttt ccccttagag tgcttgaaga aatgccacct acaggttgtg
4201 tacttttcat aatggtttcc atgaatgtag tacgttcata caggcttcat tcaacctggc
4261 gttcccctcc ataattaaga tgaaacattc cggttttctc acaacacatt agcacatact
4321 gtccattagc atatctggga taaccaggtt ttgggggttg agttttggcc ttcatccttg
4381 tagatccctt tcctattgat ttcccacctt ccagtgaaat tctgaaagtc ttatcttaaa
4441 aatcgatccg cttaccatgg gcctattctt gtaagtttca gttagcattt gcatgtgtaa
4501 tattaaaatg aaagagcttc ttacccagtg ctgttgccct tttgagtatt tttgttttta
4561 aaataatgat tgtaaaatgt tttacaagta atgtaaaagc tagtatcatt cttacatact
4621 tctgtgttta aattttcatt cttaccaaaa cagttaactc tttctttcca atcaatttat
4681 acaaaagagg tcgctccagc cctaccacag gtctgactgg cactgccttt tgtttgccct
4741 tgaacagggc agtgttgtgg ggactgcaaa agagaaaacg tccaggcgag cccagttgtc
4801 ctcgcccaca gggtcctgca ggctccatca gtcaccgctt tctatggcgt ttgtagttgt
4861 gtcttttaag aagtgagtgt gattgtttac ttgataaatc agctcactct ctggtgcttt
4921 ttagagaagt ccctgattcc ttcttaaact tggaatgata gatgaaattc acacccctgc
4981 agatcagaaa aaacaaatag aagaaaatga gggttacagt aacctgttgt ctttatataa
5041 cttgcaacaa actaatttat ttttttttcc tttttttgtt tttggttttt tatggttttt
5101 taaggaaaat acttttctcc tttgaagttt tacagctttt tgtaaatgcg tcctgataat
5161 gattaggaaa atcgaccttt tcatccatga tgaccatcct catagctcag atctcctttc
5221 aaagtagtgg ctttctggat ggtaattcca tcttaaggtg tcagaactat tttcaaatgc
5281 tgcctttgac agttcttgga attttctgat attaagcagt tccatgcaaa tattcgtgtt
5341 ttataaatag ctctcatagt ctgctccatc ttgatagtta agtgatttct gaagcgtttg
5401 tgtgtgtgtt gatcaggttg tgtgatattt ttgcttgata gagaatcaaa tttgaaacaa
5461 ttaaccagcc agtagattgt ctgtcagtga ccttctgtag taataaagtt tttgccactg
5521 taaataaaaa cagtatccgt agctatcagg atcattgcgc actcatatat gctaagcctt
5581 ctgttctcta atagaagcct ttcttttcca ttgtttctgg atatttgtat tatccaaatg
5641 tgcttatttc tttgccttag cacacgtttt atggagtact tgttatacta ggtttgattt
5701 gaaactggtg cttgtcgcag aactgtcaga gcatgaggag cgctcctcct gtgggtggac
5761 gcattcacgc actcccaggt tgcacctgct gctggcggtg agcagggggt tcagcagctt
5821 gaccgatgcc ccccgagggg gctctcccca gcttaaactt tgttgtttaa atttgttaac
5881 tttttatatt aatgactatt gaaagtggta ataaaaattt atattatagg cttcaatgtt
5941 ttcatgaatg ttacccaaaa agctgtgttt tctttggtca gaggtcaaaa tttatgaaaa
6001 acaaaatgct gtatgaatgg aaatcatttt gcaattgagt gacacttcat tgtaattcac
6061 agtgtaaatt taatccaaac tgaaattttg tttcaactga atttgtaatt aactctgaat
6121 ttgtttttaa tcattagtaa tatttcagtt gggtatcttt ttaagtaaaa acaacaaata
6181 aactctgtac atgtaaaacg tga
//