LOCUS AL136601 2878 bp mRNA linear HTC 15-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp564J1516 (from clone DKFZp564J1516).
ACCESSION AL136601
VERSION AL136601.2
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2878)
AUTHORS Bahr A., Lauber J., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
CONSRTM The German cDNA Consortium
JOURNAL Submitted (20-JAN-2005) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research
Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by Qiagen (Hilden/Germany) within the cDNA sequencing
consortium of the German Genome Project.
This clone (DKFZp564J1516) is available at the RZPD Deutsches
Ressourcenzentrum fuer Genomforschung GmbH in Berlin, Germany.
Please contact RZPD for ordering:
http://www.rzpd.de/cgi-bin/products/cl.cgi?CloneID=DKFZp564J1516
Further information about the clone and the sequencing project is
available at http://mips.gsf.de/projects/cdna/
FEATURES Location/Qualifiers
source 1..2878
/db_xref="H-InvDB:HIT000025197"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="fetal"
/clone_lib="564 (synonym: hfbr2). Vector pAMP1; host
Xl-2blue; sites NotI + SalI"
/clone="DKFZp564J1516"
/tissue_type="brain"
/note="staufen isoform a"
/db_xref="taxon:9606"
CDS 352..1842
/codon_start=1
/gene="DKFZp564J1516"
/product="hypothetical protein"
/db_xref="GOA:O95793"
/db_xref="H-InvDB:HIT000025197.17"
/db_xref="HGNC:HGNC:11370"
/db_xref="InterPro:IPR014720"
/db_xref="InterPro:IPR032478"
/db_xref="PDB:4DKK"
/db_xref="PDB:6HTU"
/db_xref="UniProtKB/Swiss-Prot:O95793"
/protein_id="CAB66536.1"
/translation="MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPL
LYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNK
SEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNA
AIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKK
EKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVP
QAQPTKPALKSEEKTPIKKPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPA
GILPMVPEVAQAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILK
NNISSGHVPHGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLIS
HGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPMSVCGRC"
BASE COUNT 806 a 726 c 674 g 672 t
ORIGIN
1 gggggggcgc ctgagcggct cttcagcgtt tgcgccggcg gctgccgcgt ctctctcggc
61 tcccgcttcc tttgaccgcc tccccccccg gcccggcggc gcccgcctcc tccacggcca
121 ctccgcctct tccctccctt cgtcccttct tcctctccct tttttccttc ttccttcccc
181 tcctcgccgc caccgcccag gaccgccggc cgggggacga gctcggagca gcagccagag
241 tttattaacc acttaacctc tcagaactga acaaagacaa cattgttcct ggaacgccct
301 ctttttaaaa aagaaagcat aacccctact gtagaactaa atgcactgtg catgaaactt
361 ggaaaaaaac caatgtataa gcctgttgac ccttactctc ggatgcagtc cacctataac
421 tacaacatga gaggaggtgc ttatcccccg aggtactttt acccatttcc agttccacct
481 ttactttatc aagtggaact ttctgtggga ggacagcaat ttaatggcaa aggaaagaca
541 agacaggctg cgaaacacga tgctgctgcc aaagcgttga ggatcctgca gaatgagccc
601 ctgccagaga ggctggaggt gaatggaaga gaatccgaag aagaaaatct caataaatct
661 gaaataagtc aagtgtttga gattgcactt aaacggaact tgcctgtgaa tttcgaggtg
721 gcccgggaga gtggcccacc ccacatgaag aactttgtga ccaaggtttc ggttggggag
781 tttgtggggg aaggtgaagg gaaaagcaag aagatttcaa agaaaaatgc cgccatagct
841 gttcttgagg agctgaagaa gctaccgccc ctgcctgcag ttgaacgagt aaagcctaga
901 atcaaaaaga aaacaaaacc catagtcaag ccacagacaa gcccagaata tggccagggg
961 atcaatccga ttagccgact ggcccagatc cagcaggcaa aaaaggagaa ggagccagag
1021 tacacgctcc tcacagagcg aggcctcccg cgccgcaggg agtttgtgat gcaggtgaag
1081 gttggaaacc acactgcaga aggaacgggc accaacaaga aggtggccaa gcgcaatgca
1141 gccgagaaca tgctggagat ccttggtttc aaagtcccgc aggcgcagcc caccaaaccc
1201 gcactcaagt cagaggagaa gacacccata aagaaaccag gggatggaag aaaagtaacc
1261 ttttttgaac ctggctctgg ggatgaaaat gggactagta ataaagagga tgagttcagg
1321 atgccttatc taagtcatca gcagctgcct gctggaattc ttcccatggt gcccgaggtc
1381 gcccaggctg taggagttag tcaaggacat cacaccaaag attttaccag ggcagctccg
1441 aatcctgcca aggccacggt aactgccatg atagcccgag agttgttgta tgggggcacc
1501 tcgcccacag ccgagaccat tttaaagaat aacatctctt caggccacgt accccatgga
1561 cctctcacga gaccctctga gcaactggac tatctttcca gagtccaggg attccaggtt
1621 gaatacaaag acttccccaa aaacaacaag aacgaatttg tatctcttat caattgctcc
1681 tctcagccac ctctgatcag ccatggtatc ggcaaggatg tggagtcctg ccatgatatg
1741 gctgcgctga acatcttaaa gttgctgtct gagttggacc aacaaagtac agagatgcca
1801 agaacaggaa acggaccaat gtctgtgtgt gggaggtgct gaaccttttc tggccatgaa
1861 ccattataaa atcccaacat atatactgaa aatactgaaa ctgctttgaa aatttggaat
1921 ttctgatacc tccagtgggc cgagagacac ggtgggtaaa ggatgtgggc agcagcaggg
1981 aagacaacag aaacacaagg aggcggctgt ggccgggctg gactgtgcgg gggtttgttg
2041 tgatggccac tcggtgacct ggcggtccct acgcaatagc agctgcctgt ggggaagagg
2101 ggctgcccag ccagctggtt ctcccgggac accagcagat ccacaccctg ggcacctccg
2161 tgtttggtct tttttttccc ctgtgtgaaa gaagaaacgg cacgacccct tctcaagctg
2221 gctcactcag acacattggg acaaaccctg gacagccatg ccagagagag gcctttgacc
2281 ggccccagag ctaaaagcac cagagaaaat caaatgcttc ctactcagcg tgacccaact
2341 tttctagtgt gccacggccc caccacctcc tgcagtccca caccatcacc actgctttct
2401 cttccaacag tgatctgtat tcttagtttc attattttct tttgattgat atgacactat
2461 ataaaatttt catttgagaa tttctcaatt gtatctagtt aaatagcaca gtttggaaac
2521 ttgtctgaga ctgactttat caataatcta accgacaaag atcatatcca tgtgtatgtg
2581 gttagacatt tttatttcat tgactaaccc aggacagttt cagtgatgca aattgtgtgc
2641 cctctggttc agctgaaaca gtcctggact ttcaaaaacc ttgaataagt ctcccacagt
2701 tgtataaatt ggacaattta ggaattttaa actttagatg atcatttggt tccattttta
2761 tttcattttt atttttgtta atgcaaacag gacttaaatg aactttgatc tctgttttaa
2821 agattattaa aaaacattgt gtatctataa aaaaaaaaaa aaaaaaaatg atgtcgac
//