LOCUS AL117417 3005 bp mRNA linear HUM 18-FEB-2000
DEFINITION Homo sapiens mRNA; cDNA DKFZp434E098 (from clone DKFZp434E098).
ACCESSION AL117417
VERSION AL117417.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3005)
AUTHORS Ottenwaelder B., Obermaier B., Mewes H.W., Gassenhuber J.,
Wiemann S.
JOURNAL Submitted (15-SEP-1999) to the INSDC. MIPS, Am Klopferspitz 18a,
D-82152 Martinsried, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by MediGenomix (Martinsried/Germany) within the cDNA
sequencing consortium of the German Genome Project.
This clone (DKFZp434E098) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://www.mips.biochem.mpg.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..3005
/db_xref="H-InvDB:HIT000024579"
/organism="Homo sapiens"
/map="21q11.1"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="434 (synonym: htes3). Vector pSport1; host
DH10B; sites NotI + SalI"
/clone="DKFZp434E098"
/tissue_type="testis"
/db_xref="taxon:9606"
CDS join(<1..225,227..2005)
/codon_start=1
/gene="DKFZp434E098"
/product="hypothetical protein"
/note="pre-mRNA splicing SR protein rA4"
/note="The frame shift was determined manually"
/db_xref="GOA:O95104"
/db_xref="H-InvDB:HIT000024579.17"
/db_xref="HGNC:HGNC:19304"
/db_xref="InterPro:IPR000504"
/db_xref="InterPro:IPR006569"
/db_xref="InterPro:IPR006903"
/db_xref="InterPro:IPR008942"
/db_xref="InterPro:IPR012677"
/db_xref="InterPro:IPR034369"
/db_xref="InterPro:IPR035979"
/db_xref="UniProtKB/Swiss-Prot:O95104"
/protein_id="CAB55911.1"
/translation="AFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQ
AITAQLKTTPTQPSEQKAAFPPPEQKTAFDKFDYDDEPEAVEESKKEDTTAVTTTAPA
AAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQ
QDPMHHQVPLPPNGQMPGFGLLPTPPFPPMAQPVIPPTPPVQQPFQASFQAQNEPLTQ
KPHQQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSR
SRDRRRHSPRSRSQERRDREKERERRQKGLPQVKPETASVCSTTLWVGQLDKRTTQQD
VASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWAL
NKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKPEN
EVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQP
PAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPP
PHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAA
PTNLPTPPVTQPVSLLGKLFFFIISFPCPTPPHPPTHPQVRFF"
regulatory 2951..2956
/regulatory_class="polyA_signal_sequence"
polyA_site 2972
BASE COUNT 842 a 743 c 574 g 846 t
ORIGIN
1 gcttttgctg ctgtggctca gctgtttcag acaactcaag gccaacagct tcagcagatc
61 cttcagactt ttcaacagcc tccaaaacca cagtctcctg cccttgacaa tgctgtgatg
121 gctcaggttc aggctatcac agctcagtta aagacaactc ctacacaacc atctgaacaa
181 aaagctgctt tccccccacc tgaacagaaa actgcatttg acaagatttg actatgatga
241 tgagccagaa gctgtggaag aatcaaagaa agaggatacc actgccgtca ccacgacagc
301 acctgctgcc gcggtacccc ctgcacccac cgccaccgtg cctgctgctg ctgcacccgc
361 tgctgcctct cctcctcctc cacaggcacc atttggcttt cctggagatg gcatgcagca
421 gccagcatac acacagcatc aaaatatgga tcagtttcag ccacgaatga tgggaataca
481 acaggatcca atgcaccatc aggttccact tcctcctaat ggacaaatgc caggatttgg
541 acttcttcct acacctccat ttcctcccat ggctcagcct gtgattcctc caactccacc
601 agtgcagcag cctttccaag cttcttttca ggcacaaaat gaaccactta cacagaagcc
661 gcatcagcag gaaatggaag tagaacaacc ttgtattcaa gaggttaagc gacatatgtc
721 tgataacaga aagtcaagat ctaggtcagc atccaggtca ccaaaaagga ggcgatctag
781 atctggttct agatctcgaa ggtctcggca tcgacgttct cgatctcggt ccagggatag
841 acgccgacat tctccccgat ctcgatctca agaaagacgg gatcgagaaa aagagagaga
901 acgtcgacaa aaaggcctcc ctcaagtgaa accggaaact gcaagtgttt gcagtactac
961 cctctgggtg gggcagctgg acaaaagaac tactcagcag gatgttgcca gtctcttgga
1021 agagtttggt ccaattgaat caattaatat gattcctccc aggggttgtg cctatattgt
1081 tatggttcat aggcaagatg cctatcgtgc cctgcagaaa ctgagccgag gaaactataa
1141 agtgaaccag aaatccataa agattgcctg ggccttaaac aaaggaataa aggcagatta
1201 taagcagtat tgggatgtag aacttggtgt tacttatatt ccatgggaca aagtcaagcc
1261 tgaggaactg gagagttttt gtgaaggagg aatgttggac agtgacacac ttaacccaga
1321 ttggaaagga attcctaaga agcctgaaaa tgaagttgct caaaatggag gtgctgaaac
1381 ctcacacaca gaaccagtat cacccatacc taaaccatta cctgtgcctg tccctcctat
1441 tcctgttcct gcacctataa cagtgccacc tccacaggtc ccaccacatc aaccgggtcc
1501 acctgtagtt ggtgctctcc agccgcctgc tttcacgcct cctctgggaa taccgcctcc
1561 aggctttggt cctggtgttc ctcctccccc tcctcctcca ccatttttgc gcccaggatt
1621 caacccaatg catttaccac caggttttct gcctcctgga cccccacctc ctataactcc
1681 accagtatcc attcctcctc ctcacactcc accaataagc atcccaaact ctactatcgc
1741 tggtataaat gaagacacta caaaagactt atctattgga aatcccattc caacagtggt
1801 gtctggggct agaggaaacg ccgagtctgg tgacagcgtg aaaatgtatg gctctgccgt
1861 gccacctgct gcacccacga atctgcccac ccctcctgta acccagcctg tttcacttct
1921 tggtaagtta ttttttttta tcattagttt tccttgcccc accccccccc acccccccac
1981 ccatccccaa gttagatttt tttaaaaaaa caatgttaat tttggtaaaa ttatttccaa
2041 gactggcttt tttggttgtt ttgtttgttt gtttgttttt gaggaagatc ttcctcttaa
2101 agtcaaatat gtgtacttga tctttaccaa gagagaatct caaagacaaa atcatgtttg
2161 tctgtcttga ataaaagttt ggatcttcac atccttattt ggtatagaaa aatgattaaa
2221 agtaatctct gtgcaaagga attggtacag agttcgtaat tcacttaacc ttagtctctt
2281 cccagctttt aggagatact tctttaacgg cataggtttt tctctgtctg gaccaattat
2341 tatctatctg aaacccctgg acttgggtag cgttctttgt gggctagcaa agaaatcatc
2401 tttgatacat tccaataaaa tggctttgtt ttctaagtaa cagttgcgca gcctgaggta
2461 ccactttccc actcactctc agtttacttg gctggagttt atctgttgta ctttttaccc
2521 acaacttcaa tactgtgatc aagggcgatg tgacttagat cttttacatc tttaagcagg
2581 cttactcttg cctgcttaag ttatgaataa atacatcaca tgcttgttac agtagaccat
2641 cttttaaatt aacaaattgt tgtatttgaa gtggtattgc caaatataat taacacttga
2701 atcccctaac tggaagttaa tatcttgaga gtattacagt gttctagtcc tgtgagccca
2761 tagtattttt caaaggtata tgcatatgcc tgtttgcttt cataatctga gttgttttag
2821 gaaagaacct attgattacc tctgagatgt aggactgtga gacattggtt tgtaatggag
2881 gacttttact tttcacctat gctattcagt actgttggaa ttttttattt tttgcatgta
2941 ctatatttat aataaaaaaa caatttgttt ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3001 aaagg
//