LOCUS AL049989 1649 bp mRNA linear HUM 15-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp564F052 (from clone DKFZp564F052);
partial cds.
ACCESSION AL049989
VERSION AL049989.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1649)
AUTHORS Duesterhoeft A., Lauber J., Mewes H.W., Gassenhuber J., Wiemann S.
JOURNAL Submitted (15-MAY-1999) to the INSDC. MIPS, Am Klopferspitz 18a,
D-82152 Martinsried, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by Qiagen (Hilden/Germany) within the cDNA sequencing
consortium of the German Genome Project.
This clone (DKFZp564F052) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://www.mips.biochem.mpg.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..1649
/db_xref="H-InvDB:HIT000023891"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="fetal"
/clone_lib="564 (synonym: hfbr2). Vector pAMP1; host
Xl-2blue; sites NotI + SalI"
/clone="DKFZp564F052"
/tissue_type="brain"
/db_xref="taxon:9606"
CDS <1..1265
/codon_start=3
/gene="DKFZp564F052"
/product="hypothetical protein"
/note="sorting nexin 7"
/db_xref="GOA:Q9UNH6"
/db_xref="H-InvDB:HIT000023891.19"
/db_xref="HGNC:HGNC:14971"
/db_xref="InterPro:IPR001683"
/db_xref="InterPro:IPR027267"
/db_xref="InterPro:IPR028656"
/db_xref="InterPro:IPR036871"
/db_xref="InterPro:IPR042130"
/db_xref="InterPro:IPR042131"
/db_xref="PDB:3IQ2"
/db_xref="UniProtKB/Swiss-Prot:Q9UNH6"
/protein_id="CAB43229.1"
/translation="GGSSGSSALLQAEVLDLDEDEDDLEVFSKDASLMDMNSFSPMMP
TSPLSMINQIKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFE
VRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGIVERFNDDFIETRRKALHKFLNR
IADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRTGQTVRAVASSMRGVKNRPEE
FMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILWSASEEDLVDTLK
DVASCIDRCCKATEKRMSGLSEALLPVVHEYVLYSEMLMGVMKRRDQIQAELDSKVEV
LTYKKADTDLLPEEIGKLEDKVGCANNALKADWERWKQNMQNDIKLAFTDMAEENIHY
YEQCLATWESLLTSQTNLHLEEASEDKP"
regulatory 1615..1620
/regulatory_class="polyA_signal_sequence"
polyA_site 1629
BASE COUNT 545 a 280 c 355 g 469 t
ORIGIN
1 tggggggcag cagcggctct tccgccctgc tgcaggcgga ggtgctggat ctggacgagg
61 acgaggacga cctggaggtg ttcagcaagg atgcctcatt gatggacatg aactccttca
121 gccctatgat gccaacatcc cctttatcaa tgataaacca aatcaagttt gaggatgaac
181 cagatttaaa ggatctcttc atcacagttg atgaacctga aagtcatgtt actacaatag
241 aaactttcat tacgtatagg attattacta agacatctcg tggggaattt gactccagtg
301 aatttgaagt taggagacga tatcaagatt tcctttggtt gaagggaaaa ctggaagaag
361 cacaccccac tctgattatt ccaccattgc cagaaaagtt tatagtaaaa ggaatcgtgg
421 aacgctttaa cgatgacttc attgagacac gcaggaaggc tttacataaa tttttgaacc
481 gaattgctga tcatccaact ttaacattta atgaagactt caaaattttt ctcactgcac
541 aagcttggga actctcttct cacaagaagc aaggtcctgg cttgctaagc aggacggggc
601 aaaccgtcag agctgttgcg tcctcaatga gaggagttaa aaaccgccca gaggagttca
661 tggaaatgaa taactttatt gaactattta gccagaaaat aaatttgata gataaaatat
721 ctcagagaat ttataaggaa gaaagggaat attttgatga aatgaaagaa tatggcccaa
781 ttcatattct gtggtcagcg tcagaagagg atctggttga tactctaaag gatgttgcca
841 gctgcattga cagatgctgt aaggccactg aaaagcggat gtctggactc tcagaggccc
901 tgcttcctgt tgtacatgag tacgtgcttt atagtgaaat gttaatgggt gttatgaaaa
961 gaagagacca aatacaagca gaactggatt ccaaagttga agttttgacc tataaaaagg
1021 cagatactga tctgcttcca gaggagattg gaaaacttga agataaagtg ggatgtgcta
1081 ataatgccct gaaagcagat tgggagagat ggaaacaaaa tatgcaaaat gatatcaagt
1141 tagcatttac agatatggct gaggagaata tccattatta tgaacagtgc cttgctacgt
1201 gggaatcact ccttacatca cagaccaacc ttcacttgga agaagcctct gaagataaac
1261 cttaatccca ttgaggactt ctgtttgatc tttgggagac agcatttatt aaccaaagtt
1321 attctttctg gatctgccgt gtccttataa agtggatgaa aaatgttttg tacccatctg
1381 gaaaaccaac aacttgaaat ctcaggtatt ccaggtcact gacatgaatt tgaagatata
1441 tctatctgta tggatatata tctatatgta tatagatata taaatacaga gagatatctg
1501 gcttggtttt aattatgttc ttaaatttgt gtgccaataa ttgcatatag attttttttc
1561 ttaaatattt gactgtggaa catgccattt taaatatgtt gtaaggactg ttttaataaa
1621 aagtttagta tgaaaaaaaa aaaaaaaaa
//