LOCUS AK316417 3270 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA, FLJ79316 complete cds, highly similar to
Nuclear pore complex protein Nup214.
ACCESSION AK316417
VERSION AK316417.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3270)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3270
/clone="TESTI4015438"
/clone_lib="TESTI4"
/db_xref="H-InvDB:HIT000500030"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 304..3054
/codon_start=1
/note="highly similar to Nuclear pore complex protein
Nup214"
/protein_id="BAH14788.1"
/transl_table=1
/translation="MKSSLLLRGVHFCFHLPGTAKIETAVTSTPSASGQFSKPFSFSP
SGTGFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGGSKPSYEAIPESSPPSG
ITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLFPSSLAGETLGSF
SGLRVGQADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTSSA
TTTSVAPPAATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTV
PPSAPPPTTAATPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDS
EVSASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAE
ATPATTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIV
APGPSAEAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTA
PSLFGQQTGSTASTAAATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAA
SVFSFSQPGFSSVPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLF
GQSNAPAFGQSPGFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAAS
TGGIVFGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTA
TSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGA
APVFGSPPTFGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSS
NTTSFGTLASQNAPTFGSLSQQTSGFGTQSSGFSGFGSGTGGFSFGSNNSSVQGFGGW
RS"
BASE COUNT 746 a 945 c 783 g 796 t
ORIGIN
1 gatatggaac cacagttggt atcatgtacg cctcacatga gaaggaggta tctagcactt
61 ctcgaccggg gcctaaagct ttatgttaaa aggaaaatta tatagtagaa ctgtcaaaga
121 cttgagtatt ttacaaaaag gttttgaaag atcatatact cttttttcaa ggacttcatt
181 ggagaggttt ttgtcactct tggagttaga atcaaagaaa cctaaggaac tttgctttat
241 gcatgtctgg gcaagtagtg tgacttgcaa gaaatttccg agattcacca ttcattgctg
301 atcatgaaat cctctctttt gttacgaggt gttcacttct gttttcactt gccagggaca
361 gccaagatag aaacagctgt gacttcaacc ccatctgctt ctgggcagtt cagcaagcct
421 ttctcatttt ctccatcagg gactggcttt aattttggga taatcacacc aacaccgtct
481 tctaatttca ctgctgcaca aggggcaaca ccctccacta aagagtcaag ccagccggac
541 gcattctcat ctggtggggg aagcaaacct tcttatgagg ccattcctga aagctcacct
601 ccctcaggaa tcacatccgc atcaaacacc accccaggag aacctgccgc atctagcagc
661 agacctgtgg caccttctgg aactgctctt tccaccacct ctagtaagct ggaaacccca
721 ccgtccaagc tgggagagct tctgtttcca agttctttgg ctggagagac tctgggaagt
781 ttttcaggac tgcgggtagg ccaagcagat gattctacaa aaccaaccaa taaggcttca
841 tccacaagcc taactagtac ccagccaacc aagacgtcag gcgtgccctc agggtttaat
901 tttactgccc ccccggtgtt agggaagcac acggagcccc ctgtgacatc ctctgcaacc
961 accacctcag tagcaccacc agcagccacc agcacttcct caactgccgt ttttggcagt
1021 ctgccagtca ccagtgcagg atcctctggg gtcatcagtt ttggtgggac atctctaagt
1081 gctggcaaga ctagtttttc atttggaagc caacagacca atagcacagt gcccccatct
1141 gccccaccac caactacagc tgccactccc cttccaacat cattccccac attgtcattt
1201 ggtagcctcc tgagttcagc aactaccccc tccctgccta tgtccgctgg cagaagcaca
1261 gaagaggcca cttcatcagc tttgcctgag aagccaggtg acagtgaggt ctcagcatca
1321 gcagcctcac ttctagagga gcaacagtca gcccagcttc cccaggctcc tccgcaaact
1381 tctgactctg ttaaaaaaga acctgttctt gcccagcctg cagtcagcaa ctctggcact
1441 gcagcatcta gtactagtct tgtagcactt tctgcagagg ctaccccagc caccacgggg
1501 gtccctgatg ccaggacgga ggcagtacca cctgcttcct ccttttctgt gcctgggcag
1561 actgctgtca cagcagctgc tatctcaagt gcaggccctg tggccgtcga aacatcaagt
1621 acccccatag cctccagcac cacgtccatt gttgctcccg gcccatctgc agaggcagca
1681 gcatttggta ccgtcacttc tggctcatcc gtctttgctc agcctcctgc tgccagttct
1741 agctcagctt tcaaccagct caccaacaac acagccactg ccccctctgc cacgcccgtg
1801 tttgggcaag tggcagccag caccgcacca agtctgtttg ggcagcagac tggtagcaca
1861 gccagcacag cagctgccac accacaggtc agcagctcag ggtttagcag cccagctttt
1921 ggtaccacag ccccaggggt ctttggacag acaaccttcg ggcaggcctc agtctttggg
1981 cagtcggcga gcagtgctgc aagtgtcttt tccttcagtc agcctgggtt cagttccgtg
2041 cctgccttcg gtcagcctgc ttcctccact cccacatcca ccagtggaag tgtctttggt
2101 gccgcctcaa gtaccagtag ctccagttcc ttctcatttg gacagtcttc tcccaacaca
2161 ggaggggggc tgtttggcca aagcaacgct cctgcttttg ggcagagtcc tggctttgga
2221 cagggaggct ctgtctttgg tggtacctca gctgccacca caacagcagc aacctctggg
2281 ttcagctttt gccaagcttc aggttttggg tctagtaata ctggttctgt gtttggtcaa
2341 gcagccagta ctggtggaat agtctttggc cagcaatcat cctcttccag tggtagcgtg
2401 tttgggtctg gaaacactgg aagaggggga ggtttcttca gtggccttgg aggaaaaccc
2461 agtcaggatg cagccaacaa aaacccattc agctcggcca gtgggggctt tggatccaca
2521 gctacctcaa atacctctaa cctatttgga aacagtgggg ccaagacatt tggtggattt
2581 gccagctcgt cgtttggaga gcagaaaccc actggcactt tcagctctgg aggaggaagt
2641 gtggcatccc aaggctttgg gttttcctct ccaaacaaaa caggtggctt cggtgctgct
2701 ccagtgtttg gcagccctcc tacttttggg ggatcccctg ggtttggagg ggtgccagca
2761 ttcggttcag ccccagcctt tacaagccct ctgggctcga cgggaggcaa agtgttcgga
2821 gagggcactg cagctgccag cgcaggagga ttcgggtttg ggagcagcag caacaccaca
2881 tccttcggca cgctcgcgag tcagaatgcc cccactttcg gatcactgtc ccaacagact
2941 tctggttttg ggacccagag tagcggattc tctggttttg gatcaggcac aggagggttc
3001 agctttgggt caaataactc gtctgtccag ggttttggtg gctggcgaag ctgagggcgt
3061 gtcagcaggc ctttcgatcc ctgggaccaa ccgcatcctc agcttcttcc ccgagaaatg
3121 ctggagcagg ctgttcagac cgacgttgcc atcaaaacac atacacccag aaagaaacaa
3181 cagaaaccaa aactcacaag gcgcatgatt acttgtttta tatttcatgt tgggttttcc
3241 ctcccactat taaacagtct gtttccgtac
//