LOCUS AK316182 1850 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA, FLJ79081 complete cds, highly similar to
Squalene synthetase (EC 2.5.1.21).
ACCESSION AK316182
VERSION AK316182.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1850)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1850
/clone="FELNG2002765"
/clone_lib="FELNG2"
/db_xref="H-InvDB:HIT000499795"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="lung"
CDS 68..1492
/codon_start=1
/note="highly similar to Squalene synthetase (EC
2.5.1.21)"
/protein_id="BAH14553.1"
/transl_table=1
/translation="MAAAACGTKAMALFKRTLVLSPAAAPRGPGAGTAPRGCCLPPAA
WPCKDWPRGEGGRLWSRLPQSHSHSHSHSHSCSSTSPTAVCVVCPQDSLSSSLKTCYK
YLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSF
LYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKH
VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRD
YLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYL
SRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVK
AIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLL
AALSWQYLTTLSQVTEDYVQTGEH"
BASE COUNT 443 a 485 c 467 g 455 t
ORIGIN
1 ctcgtcgggc gcttcccaga tctgcttgag tctatggagg aaaaactccg cggggtccgc
61 gattcccatg gccgcagccg cctgcggcac caaggccatg gcccttttca agcgcacctt
121 ggtgctgagt cccgccgcgg cgcccagggg cccgggcgca ggcaccgccc cgcggggctg
181 ctgcttgcct cctgccgcct ggccctgcaa ggactggcct cggggagagg gcggcaggct
241 gtggagccgc ctgccccagt cccactccca ctcccactcc cactcccact cctgctcctc
301 gacgtctccc accgccgtgt gtgttgtctg cccgcaggac tcgctcagca gcagcctgaa
361 aacttgctac aagtatctca atcagaccag tcgcagtttc gcagctgtta tccaggcgct
421 ggatggggaa atgcgcaacg cagtgtgcat attttatctg gttctccgag ctctggacac
481 actggaagat gacatgacca tcagtgtgga aaagaaggtc ccgctgttac acaactttca
541 ctctttcctt taccaaccag actggcggtt catggagagc aaggagaagg atcgccaggt
601 gctggaggac ttcccaacga tctcccttga gtttagaaat ctggctgaga aataccaaac
661 agtgattgcc gacatttgcc ggagaatggg cattgggatg gcagagtttt tggataagca
721 tgtgacctct gaacaggagt gggacaagta ctgccactat gttgctgggc tggtcggaat
781 tggcctttcc cgtcttttct cagcctcaga gtttgaagac cccttagttg gtgaagatac
841 agaacgtgcc aactctatgg gcctgtttct gcagaaaaca aacatcatcc gtgactatct
901 ggaagaccag caaggaggaa gagagttctg gcctcaagag gtttggagca ggtatgttaa
961 gaagttaggg gattttgcta agccggagaa tattgacttg gccgtgcagt gcctgaatga
1021 acttataacc aatgcactgc accacatccc agatgtcatc acctaccttt cgagactcag
1081 aaaccagagt gtgtttaact tctgtgctat tccacaggtg atggccattg ccactttggc
1141 tgcctgttat aataaccagc aggtgttcaa aggggcagtg aagattcgga aagggcaagc
1201 agtgaccctg atgatggatg ccaccaatat gccagctgtc aaagccatca tatatcagta
1261 tatggaagag atttatcata gaatccccga ctcagaccca tcttctagca aaacaaggca
1321 gatcatctcc accatccgga cgcagaatct tcccaactgt cagctgattt cccgaagcca
1381 ctactccccc atctacctgt cgtttgtcat gcttttggct gccctgagct ggcagtacct
1441 gaccactctc tcccaggtaa cagaagacta tgttcagact ggagaacact gatcccaaat
1501 ttgtccatag ctgaagtcca ccataaagtg gatttacttt ttttctttaa ggatggatgt
1561 tgtgttctct ttattttttt cctactactt taatccctaa aagaacgctg tgtggctggg
1621 acctttagga aagtgaaatg caggtgagaa gaacctaaac atgaaaggaa agggtgcctc
1681 atcccagcaa cctgtccttg tgggtgatga tcactgtgct gcttgtggct catggcagag
1741 cattcagtgc cacggtttag gtgaagtcgc tgcatatgtg actgtcatga gatcctactt
1801 agtatgatcc tggctagaat gataattaaa agtatttaat ttgaagcacc
//