LOCUS AK316068 2664 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA, FLJ78967 complete cds, highly similar to Rab
effector MyRIP.
ACCESSION AK316068
VERSION AK316068.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2664)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2664
/clone="BRHIP3030215"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000499681"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 470..2488
/codon_start=1
/note="highly similar to Rab effector MyRIP"
/protein_id="BAH14439.1"
/transl_table=1
/translation="MDTLAVALRVAEEAIEEAISKAEAYGDSLDKQNEASYLRDHKEE
LTEELATTILQKIIRKQKSKSEQQVEEEPGWPHPQSCSTKVADEGTSASPGGYRAPAA
LWRSQSAFSITGEEALKTPPVEAPSRQPRDQGQHPRAESALPSWKSVDRLDETNLAPV
LQSPDGNWVALKDGAPPPTRLLAKPKSGTFQALEVASSVASAYDEMGSDSEEDFDWSE
ALSKLCPRSRALPRNPQPQPTQAQSSDQGPIAASPSSALSPNPEAMCSDSETSSAGSS
REVGHQARLSWLQRKAPRNPAAEKMRLHGELDVNFNPQLASRETSDSSEPEEAPHTTD
RRARRWRRARLGSEEPSKEPSSPSAQLRDLDTHQVSDDLSETDISNEARDPQTLTDTT
EEKRRNRLYELAMKMSEKETSSGEDQESEPKTESENQKESLSSEDNSQSVQEELKKKF
SAVSLCNISTEVLKVINATEELIAGSTGPWESPQVPPDRQKGMFPRGTDQVRLDEQLT
SLEENVYLAAGTVYGLETQLTELEDAARCIHSGTDETHLADLEDQVATAAAQVHHAEL
QISDIESRISALTIAGLNITPCVRFTRRRDQKQRTQVQTIDTSRQQRRKLPAPPVKAE
KIETSSVTTIKTFNHNFILQGSSTNRTKERKGTTKDLMEPALESAVMY"
BASE COUNT 718 a 719 c 735 g 492 t
ORIGIN
1 agaaacgagc agtagcactg tgctgttcct tcactctggt attgctctct acccagagcc
61 ctgtgtcttt tcttaagaag actacctggc ttatcctctg tctgggcttt tctggccatg
121 aggacatgga gtgaagattt tggagctctg tgccctgtgt cctggcgttt aattatttct
181 caagacacgt gagctaaatt tgagtagaag agcttggcag aaagaaaacc accagttacg
241 gcttctgagg gcccaatctc tggaatggtt ctacaataat gtgaagagcc gcttcaagcg
301 ctttggcagt gccaaggttc tgaagaacct gtacaggaag caccggctgg agagtggcgc
361 gtgcttcgac attctaggag gaagcctttt tgagtcaaac ctggagaatg aaggaagcat
421 ttctggcagt gattcaacat tttataggca gtcagaagga catagtgtga tggacacctt
481 ggctgtggcc ctacgggtgg ctgaagaggc cattgaggaa gcaatttcca aagcagaggc
541 atatggggac agcctggaca agcaaaatga ggccagttac ctgcgggacc acaaggagga
601 gctaactgag gaactggcca cgacaatcct gcagaagatt atacgaaaac agaagagcaa
661 aagtgagcag caagtggaag aagagccagg atggccacat cctcagagtt gcagcacaaa
721 ggtggcagat gaggggacct cagcatcccc tggaggctac cgtgctcccg ctgccctctg
781 gaggtcccag tctgccttct caatcactgg agaagaagcc ctgaagaccc ctccagtgga
841 ggctccatcg aggcagccaa gggaccaagg ccaacacccg agagcagagt ctgctctgcc
901 cagctggaag agtgtggaca ggctggatga aacaaacctg gccccagttt tgcagagccc
961 cgacgggaac tgggtggccc tgaaggatgg cgctccaccc cccacccgac tactggccaa
1021 acctaagagc gggacgtttc aggccctgga ggtggcctcc agtgtggcat ctgcctacga
1081 tgagatgggc tccgatagcg aggaagactt tgactggagt gaggccttga gcaagctgtg
1141 tcccaggtcc cgggccctgc ccaggaaccc ccagcctcag cccacacagg cccagagctc
1201 tgaccaaggc cccatagctg cctccccatc ctctgcactc tcccccaacc ctgaggccat
1261 gtgctctgac tcggagacct cctccgcagg ctcttcccga gaagttgggc accaggccag
1321 actgtcctgg ttgcagagga aggcccccag gaaccctgca gctgagaaga tgcgcttgca
1381 tggagagctg gacgtgaact tcaaccccca gttggccagc agggagacct cggacagcag
1441 cgagccggag gaggcccccc acaccacaga ccggcgggcc aggaggtgga gaagagcccg
1501 attgggctca gaagagccaa gcaaagaacc atcttccccc agcgcccagc tccgggatct
1561 agacacacat caggtgtcgg atgatttatc agagacagac atcagcaatg aggctcggga
1621 tccccagact ctcacagaca ccacagagga gaaacggaga aacaggctgt acgagttagc
1681 aatgaaaatg agtgaaaagg agacttcttc aggggaggat caggagtctg agcccaagac
1741 agaatctgag aaccagaagg aaagtctgtc ctctgaagac aacagccaga gtgtccagga
1801 agagctgaag aagaagtttt ctgctgtttc tctctgcaac atctccacag aagtcctgaa
1861 agtcatcaat gccacagagg agttgatagc aggatctaca gggccctggg agtccccaca
1921 agtccctcct gacagacaga aggggatgtt tcctcgtggg acagaccaag tgagactgga
1981 tgagcagctg acttccctgg aagaaaatgt atacctggca gcaggcactg tgtatggact
2041 ggagacccag ctgactgagc tagaagatgc cgcccgctgc atccacagcg gcactgatga
2101 gacccatctg gcggatctgg aggaccaggt ggccacggct gcagcccaag tccaccatgc
2161 tgaactccag atttcagata ttgagagccg gatttcagcc ctgaccattg caggattaaa
2221 cataacacca tgtgtgcgct tcacaagaag acgggatcag aagcaaagga cccaggtaca
2281 aaccatagat acatcaaggc agcaaaggag gaaactgcct gctccaccgg tgaaagctga
2341 aaaaattgag acatcttcag tgactaccat taaaacattt aaccacaact tcattctcca
2401 aggctcctca acaaacagga ctaaggaaag gaaaggcacc accaaggatt tgatggagcc
2461 tgctctggag tcagctgtga tgtactgaca ccatggaatt ccactgccag tgacccactg
2521 cctccggccg tacacgacag tgccttgacc caacagccat cgagtactgt atgtatttcc
2581 acctgaggag aaggcctggg gaggccacag tgcaccattg cacagggctg tcctgatacc
2641 tcatccagaa agccgtctca gact
//