LOCUS AK315983 3123 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA, FLJ78882 complete cds, highly similar to Homo
sapiens SH3 multiple domains 1 (SH3MD1), mRNA.
ACCESSION AK315983
VERSION AK315983.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3123)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3123
/clone="BRAMY3013041"
/clone_lib="BRAMY3"
/db_xref="H-InvDB:HIT000499596"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 93..3041
/codon_start=1
/note="highly similar to Homo sapiens SH3 multiple
domains 1 (SH3MD1), mRNA"
/protein_id="BAH14354.1"
/transl_table=1
/translation="MSICCCFFFRDYGSSKRKSVWLSSWAESPKKDVTGADATAEPMI
LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNG
TRDDSDINTSKTGEEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGK
EGWAPASYLKKAKDDLPTRKKNLAGPVEIIGNIMEISNLLNKKASGDKETPPAEGEGH
EAPIAKKEISLPILCNASNGSAVGVPDRTVSRLAQGSPAVARIAPQRAQISSPNLRTR
PPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRGGQKAEVIDKNSGGW
WYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVPPPAPPSKPKEAEEGPTGASE
SQDSPRKLKYEEPEYDIPAFGFDSEPELSEEPVEDRASGERRPAQPHRPSPASSLQRA
RFKVGESSEDVALEEETIYENEGFRPYAEDTLSARGSSGDSDSPGSSSLSLTRKNSPK
SGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSSSSSSSSSLSKTSGD
LKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLNRAESQSQEKMDI
STLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSSSDLITLPATTPPCP
TKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPS
HYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQALNTVNQSKKATPPI
PSKPPGGFGKTSGTPAVKMRNGVRQVAVRPQSVFVSPPPKDNNLSCALRRNESLTATD
GLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNSIPVSPVRPKPIEK
SQFIHNNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGW
VPSNYLEKKN"
BASE COUNT 717 a 968 c 939 g 499 t
ORIGIN
1 acatcacatg agcagcggca ccggggaccg accgcagcca gcccgagggc gcccctgcag
61 ctgcagcccc gcgctcgcgc ccggccctaa ccatgtctat ctgttgttgc ttctttttca
121 gggactatgg cagttccaag aggaaatcag tgtggctgtc cagctgggct gagtcgccca
181 agaaggacgt gacaggtgcc gacgccaccg ccgagcccat gatcctggaa cagtacgtgg
241 tggtgtccaa ctataagaag caggagaact cggagctgag cctccaggcc ggggaggtgg
301 tggatgtcat cgagaagaac gagagcggct ggtggttcgt gagcacttct gaggagcagg
361 gctgggtccc tgccacctac ctggaggccc agaatggtac tcgggatgac tccgacatca
421 acacctctaa gactggagaa gaggagaagt atgtcaccgt gcagccttac accagccaaa
481 gcaaggacga gattggcttt gagaagggcg tcacagtgga ggtgatccgg aagaatctgg
541 aaggctggtg gtatatcaga tacctgggca aagagggctg ggcgccagca tcctacctga
601 agaaggccaa ggatgacctg ccaacccgga agaagaacct ggccggccca gtggagatca
661 ttgggaacat catggagatc agcaacctgc tgaacaagaa ggcgtctggg gacaaggaaa
721 ctccaccagc cgaaggcgag ggccatgagg cccccattgc caagaaggag atcagcctgc
781 ccatcctctg caatgcctcc aatggcagtg ccgtgggcgt tcctgacagg actgtctcca
841 ggctggccca gggctctcca gctgtggcca ggattgcccc tcagcgggcc cagatcagct
901 ccccgaacct acggacaaga cctccaccac gcagagaatc cagcctgggg ttccaactgc
961 caaagccacc agagccccct tctgttgagg tggagtacta caccattgcc gaattccagt
1021 cgtgcatttc cgatggcatc agctttcggg gtggacagaa ggcagaggtc attgataaga
1081 actcaggtgg ctggtggtac gtgcagatcg gtgagaagga gggctgggcc cccgcatcat
1141 acatcgataa gcgcaagaag cccaacctga gccgccgcac aagcacgctg acccggccca
1201 aggtgccccc gccagcaccc cccagcaagc ccaaggaggc cgaggagggc cctacggggg
1261 ccagtgagag ccaggactcc ccgcggaagc tcaagtatga ggagcctgag tatgacatcc
1321 ctgcattcgg ctttgactca gagcctgagc tgagcgagga gcccgtggag gacagagcct
1381 caggggagag gcggcctgcc cagccccacc ggccctcgcc ggcctcttct ctgcagcggg
1441 cccgcttcaa ggtgggtgag tcttcagagg atgtggccct ggaagaggag accatctatg
1501 agaatgaggg cttccggcca tatgcagagg acaccctgtc agccagaggc tcctccgggg
1561 acagcgactc cccaggcagc tcctcgctgt ccctgaccag gaaaaactcc cccaaatcag
1621 gctcccccaa gtcatcatca ctcctaaagc tcaaggcaga gaagaatgcc caggcagaaa
1681 tggggaagaa ccactcctca gcctcctttt cctcatccat caccatcaac accacttgct
1741 gctcctcctc ttcctcctcc tcctcttcct tgtccaaaac cagtggcgac ctgaagcccc
1801 gctctgcttc ggacgcaggc atccgcggca ctcccaaggt cagggcaaag aaggatgctg
1861 atgcgaacgc tgggctgacc tcctgtcccc gggccaagcc atcggtccgg cccaagccat
1921 tcctaaaccg agcagagtcg cagagccaag agaagatgga catcagcact ttacggcgcc
1981 agctgagacc cacaggccag ctccgtggag ggctcaaggg ctccaagagt gaggattcgg
2041 agctgccccc gcagacggcc tccgaggctc ccagtgaggg gtctaggaga agctcatccg
2101 acctcatcac cctcccagcc accactcccc catgtcccac caagaaggaa tgggaagggc
2161 cagccacctc gtacatgaca tgcagcgcct accagaaggt ccaggactcg gagatcagct
2221 tccccgcggg cgtggaggtg caggtgctgg agaagcagga gagcgggtgg tggtatgtga
2281 ggtttgggga gctggagggc tgggcccctt cccactattt ggtgctggat gagaacgagc
2341 aacctgaccc ctctggcaaa gagctggaca cagtgcccgc caagggcagg cagaacgaag
2401 gcaagtcaga cagcctggag aagatcgaga ggcgcgtcca agcactgaac accgtcaacc
2461 agagcaagaa ggccacgccc cccatcccct ccaaacctcc cgggggcttt ggcaagacct
2521 caggcactcc agcggtgaag atgaggaacg gagtgcggca ggtggcggtc aggccccagt
2581 cggtgtttgt gtccccgcca cccaaggaca acaacctgtc ctgcgccctg cggaggaatg
2641 agtcactcac ggccactgat ggcctccgag gcgtccgacg gaactcctcc tttagcactg
2701 ctcgctccgc tgccgccgag gccaagggcc gcctggccga acgggctgcc agccagggtt
2761 cagactcacc cctactgccc gcccagcgca acagcatccc cgtgtcccct gtgcgcccca
2821 agcccatcga gaagtctcag ttcatccaca ataacctcaa agatgtgtac gtctctatcg
2881 cagactacga gggggatgag gagacagcag gcttccagga gggggtgtcc atggaggttc
2941 tggagaggaa ccctaatggc tggtggtact gccagatcct ggatggtgtg aagcccttca
3001 aaggctgggt gccttccaac taccttgaga aaaagaacta gcagagggcc tgggctcttc
3061 cagcctcagt gtgcctctct ggccgcccac tggatgagcg gtgagacgaa caaaagggaa
3121 agg
//