LOCUS AK315971 1408 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA, FLJ78870 complete cds, highly similar to Homo
sapiens FERM and PDZ domain containing 2 (FRMPD2), transcript
variant 1, mRNA.
ACCESSION AK315971
VERSION AK315971.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1408)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1408
/clone="BRAMY2034894"
/clone_lib="BRAMY2"
/db_xref="H-InvDB:HIT000499584"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 221..1183
/codon_start=1
/note="highly similar to Homo sapiens FERM and PDZ domain
containing 2 (FRMPD2), transcript variant 1, mRNA"
/protein_id="BAH14342.1"
/transl_table=1
/translation="MTSIPFPGDRLLQVDGVILCGLTHKQAVQCLKGPGQVARLVLER
RVPRSTQQCPSANDSMGDERTAVSLVTALPGRPSSCVSVTDGPKFEVKLKKNANGLGF
SFVQMEKESCSHLKSDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRSTEGLIFQEVL
HLLRGAPQEVTLLLCRPPPGALPEMEQEWQTPELSADKEFTRATCTDSCTSPILDQED
SWRDSASPDAGEGLGLRPESSQKAIREAQWGQNRERPWASSLTHSPESHPHLCKLHQE
RDESTLATSLEKDVRQNCYSVCDIMRLGRYSFSSPLTRLSTDIF"
BASE COUNT 333 a 363 c 383 g 329 t
ORIGIN
1 attctgtgag ccaataatag aaaggctttt atatccctga tctgtgatgt gcctgagaag
61 aagggagtga gactgctcag agaggcagga ttcctgctga ctccaggggg acacctggca
121 cctcagcttc ctttcccact tctccaggct gcatggaggg gtgccgggca ggggcctcct
181 ggaagggaac ctcctgcagc ctcaagcacc aggtcatgac atgacatcta tccctttccc
241 aggtgaccga ctcctgcagg tggatggagt gattctgtgc ggcctcaccc acaagcaggc
301 tgtgcagtgc ctgaagggtc ctgggcaggt tgcaagactg gtcttagaga gaagagtccc
361 caggagtaca cagcagtgtc cttctgctaa tgacagcatg ggagatgaac gcacggctgt
421 ttccttggtg acagccttgc ctggcaggcc ttcgagctgt gtctcggtga cagatggtcc
481 taagtttgaa gtcaaactaa aaaagaatgc caatggtttg ggattcagtt tcgtgcagat
541 ggagaaagag agctgcagcc atctcaaaag tgatcttgtg aggattaaga ggctctttcc
601 ggggcagcca gctgaggaga atggggccat tgcagctggt gacattatcc tggccgtgaa
661 tggaaggtcc acggaaggcc tcatcttcca ggaggtgctg catttactga gaggggcccc
721 acaggaagtc acgctcctcc tttgccgacc ccctccaggt gcgctgcctg agatggagca
781 ggaatggcag acacctgaac tctcagctga caaagaattc accagggcaa catgtactga
841 ctcatgtacc agccccatcc tggatcaaga ggacagctgg agggacagtg cctccccaga
901 tgcaggggaa ggcctgggtc tcaggccaga gtcttcccaa aaggccatca gagaggcaca
961 atggggccaa aacagagaga gaccttgggc cagttccttg acacattctc ctgagtccca
1021 ccctcattta tgcaaacttc accaagaaag ggatgaatca acattggcga cctctttgga
1081 aaaggatgtg aggcaaaact gctattcagt ttgtgatatc atgagacttg gaagatattc
1141 cttctcatct cctctaacca gactttcgac agatattttc tgagcacctt ctctgcatgt
1201 ctgcagtgct gtgtaaaatg ccctaccttt gcatggacta ttctttctaa tcaagaggcg
1261 tgtgtggcga acttggggca gcccctggaa gtcttgttct ttgaccatta cgtctgcggc
1321 tgcatcacca gataatgagc ttcaccactc gtctgcctcc tgtgtccttc cgcggggagt
1381 aaatgtcact tcagcttgcc gcatctct
//