LOCUS AK315569 2680 bp mRNA linear HTC 24-MAY-2008
DEFINITION Homo sapiens cDNA, FLJ96642, highly similar to Homo sapiens
gephyrin (GPHN), mRNA.
ACCESSION AK315569
VERSION AK315569.1
KEYWORDS HTC; HTC_FLI; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2680)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Kaida,T., Tsuchiya,K.,
Iida,Y., Takayama,Y., Murakawa,K., Kanehori,K., Andoh,T.,
Kagawa,N., Sato,R., Kawamura,Y., Tanaka,S., Kisu,Y., Sugano,S.,
Goshima,N., Nomura,N. and Isogai,T.
TITLE NEDO functional analysis of protein and research application
project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC and Biological
Information Research Center (BIRC), AIST; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2680
/clone="PLACE7005416"
/clone_lib="PLACE7"
/db_xref="H-InvDB:HIT000434435"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="placenta"
CDS 371..2680
/note="highly similar to Homo sapiens gephyrin (GPHN),
mRNA"
/protein_id="BAG37944.1"
/translation="MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQ
DPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKE
VIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILP
ALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEE
KKDSGVASTEDSSSSHITAAAIAAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDER
IPDSIISRGVQVLPRDTASLSTTPSEAPRAQATSRLSTASCPTPKVQSRCSSKENILR
ASHSAVDITKVARRHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDV
YAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVATGAPI
PCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGT
HMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLAT
IQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLH
AQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGI
LDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSAN
GLLMLPPKTEQYVELHKGEVVDVMVIGRL"
BASE COUNT 690 a 721 c 646 g 623 t
ORIGIN
1 agtcctgcca tctagctgcc ttgggtctcg cgctccgcag agcgttccga cactctccgg
61 cctcgttctg ccgcctccgc gcgctctccc cgtgcggcca ccgcgccccc caagcttgcc
121 tccttcttgc cggacttggg gccgcgcgcc ctgactcctt cccctcccgc ggacccgcgc
181 actcccggcg cggcctctcc cccacgcagg ccaccgtgca ctctgtggcc tccccctcct
241 tccccgctct cctcgcgctt ctctggctcc ctagctgtcg cgctctcctc ggcgagcgcg
301 ctcccggccc gcgcgctccg ggctccggtt tctcccggct cctgtcagtg cggtgactgc
361 gctgggaaac atggcgaccg agggaatgat ccttactaac cacgaccatc aaatccgtgt
421 cggagtcctt acagtgagtg atagttgctt caggaatctt gcagaagacc gcagtgggat
481 aaatctcaaa gatctcgtac aagatccttc tttgttgggt gggactatat cagcatacaa
541 gatagtacca gatgaaatag aagaaatcaa ggaaaccctg atagattggt gtgatgaaaa
601 ggaacttaat ttgatattaa caactggagg aacaggattt gcaccacgag atgtcactcc
661 agaggccaca aaagaagtaa tagaacggga agcaccaggg atggccctgg caatgctgat
721 gggatcactt aatgttacac ctctgggcat gctctctagg cctgtatgtg gaatcagagg
781 gaaaacgctc ataattaacc tgccaggtag caagaaagga tctcaggaat gctttcaatt
841 catactgcca gctctacctc atgccattga ccttttacgt gatgccattg taaaagtaaa
901 ggaggtgcat gatgaacttg aagatttgcc ttccccacct ccccctcttt cccctcctcc
961 tactaccagc ccccataaac agacagaaga caaaggagtt caatgtgagg aagaggaaga
1021 agagaagaaa gacagtggtg ttgcttcaac agaagatagt tcctcatcac atataactgc
1081 agcagccatt gctgccaaga agcatccatt ctacaccagt cctgctgttg tcatggcaca
1141 cggtgaacag cccatccctg gtctcatcaa ttattcccat cattcaacag atgaacggat
1201 tccagactcc atcatttctc gtggtgttca ggtgctccca cgagacacag cctccctcag
1261 cactactcct tcagaagcgc ctcgtgctca ggctacatct cgcctctcta cagcttcctg
1321 cccaacacca aaagtccagt ccaggtgcag cagcaaggag aacattctca gagccagtca
1381 cagtgctgtc gatatcacca aggtggctag aagacatcgc atgtctcctt ttcctctgac
1441 atctatggac aaagccttta tcacagtcct ggagatgact ccggtgcttg ggacagaaat
1501 catcaattac cgagatggaa tggggcgagt ccttgctcaa gatgtatatg caaaagacaa
1561 tttacccccc ttcccagcat cagtaaaaga tggctatgct gtccgagctg ctgatggccc
1621 aggagatcgt ttcatcattg gggaatccca agctggtgaa cagccaactc agacagtaat
1681 gccaggacaa gtcatgcggg ttgcaacagg tgctccaata ccctgcggtg ctgatgcagt
1741 agtacaagtg gaagataccg aacttatcag ggaatcagat gatggcactg aagaacttga
1801 agtgcgaatt ctggtgcaag ctcggccagg ccaagatatc agacccatcg gccatgacat
1861 taaaagaggg gaatgtgttt tggccaaagg aacccacatg ggcccctcag agattggtct
1921 tctggcaact gtaggtgtca cagaggttga agttaataag tttccagtgg ttgcagtcat
1981 gtcaacaggg aatgagctgc taaatcctga agatgacctc ttaccaggga agattcgaga
2041 cagcaatcgt tcaactcttc tagcaacaat tcaggaacat ggttacccca cgatcaactt
2101 gggtattgta ggagacaacc cagatgactt actcaatgcc ttgaatgagg gtatcagtcg
2161 tgctgatgtc atcatcacat cagggggtgt atccatgggg gaaaaggact atctcaagca
2221 ggtgctggac attgatcttc atgctcagat ccattttggc agggttttta tgaaaccagg
2281 cttgccaaca acatttgcaa ctttggatat tgatggtgta agaaaaataa tctttgcact
2341 acctgggaat cctgtatcgg ctgtggtcac ctgcaatctc tttgttgtgc ctgcactgag
2401 gaaaatgcag ggcatcttgg atcctcggcc aaccatcatc aaagcaaggt tatcatgtga
2461 tgtaaaactt gatcctcgtc cagaatacca tcggtgtata ctaacttggc atcaccaaga
2521 accactacct tgggcacaga gtacaggtaa tcaaatgagc agccgtctga tgagcatgcg
2581 cagtgccaat ggattgttga tgctacctcc aaagacagaa cagtacgtgg agctccacaa
2641 aggcgaggtg gtggatgtca tggtcattgg acggctatga
//