LOCUS AK314607 2843 bp mRNA linear HTC 24-MAY-2008
DEFINITION Homo sapiens cDNA, FLJ95446, highly similar to Homo sapiens
protocadherin 20 (PCDH20), mRNA.
ACCESSION AK314607
VERSION AK314607.1
KEYWORDS HTC; HTC_FLI; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2843)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Kaida,T., Tsuchiya,K.,
Iida,Y., Takayama,Y., Murakawa,K., Kanehori,K., Andoh,T.,
Kagawa,N., Sato,R., Kawamura,Y., Tanaka,S., Kisu,Y., Sugano,S.,
Goshima,N., Nomura,N. and Isogai,T.
TITLE NEDO functional analysis of protein and research application
project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC and Biological
Information Research Center (BIRC), AIST; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2843
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP8008526"
/clone_lib="NT2RP8"
/db_xref="H-InvDB:HIT000433473"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 69..2843
/note="highly similar to Homo sapiens protocadherin 20
(PCDH20), mRNA"
/protein_id="BAG37177.1"
/translation="MGRLHRPRSSTSYRNLPHLFLFFLFVGPFSCLGSYSRATELLYS
LNEGLPAGVLIGSLAEDLRLLPRSAGRPDPQSQLPERTGAEWNPPLSFSLASRGLSGQ
YVTLDNRSGELHTSAQEIDREALCVEGGGGTAWSGSVSISSSPSDSCLLLLDVLVLPQ
EYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPVNTRLAIEHPAVDPDVGINGVQ
TYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPPLLGS
ATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVDKDLGTNAQITYSYSQ
KVPQASKDLFHLDENTGVIKLFSKIGGSVLESHKLTILANGPGCIPAVITALVSIIKV
IFRPPEIVPRYIANEIDGVVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRL
SPYKPYNNEYLLETTKPMDYELQQFYEVAVVAWNSEGFHVKRVIKMQLLDDNDNAPIF
LQPLIELTIEENNSPNAFLTKLYATDADSEERGQVSYFLGPDAPSYFSLDSVTGILTV
STQLDREEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPEN
FPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYT
LWVEAVDGGEPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEV
YAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVS
DHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVES
VSCMPTLVALSVISLGSITLVTGMGIYICLRKGEKHPREDENSEVQIPLKGKIDLHMR
ERKPMDISNI"
BASE COUNT 746 a 676 c 703 g 718 t
ORIGIN
1 ggaatgcgcg cagctcacag gccctgggag tgagctggtg cccggcgacc tggcacccgc
61 gcctggatat ggggcgtcta catcgtccca ggagcagcac cagctacagg aacctgccgc
121 atctgtttct gtttttcctc ttcgtgggac ccttcagctg cctcgggagt tacagccggg
181 ccaccgagct tctgtacagc ctaaacgagg gactacccgc gggggtgctc atcggcagcc
241 tggccgagga cctgcggctg ctgcccaggt ctgcagggag gccggacccg cagtcgcagc
301 tgccagagcg caccggtgct gagtggaacc cccctctctc cttcagcctg gcctcccggg
361 gactgagtgg ccagtacgtg accctagaca accgctctgg ggagctgcac acttcagctc
421 aggagatcga cagggaggcc ctgtgtgttg aagggggtgg agggactgcg tggagcggca
481 gcgtttccat ctcctcctct ccttctgact cttgtctttt gctgctggat gtgcttgtcc
541 tgcctcagga atacttcagg tttgtgaagg tgaagatcgc catcagagac atcaatgaca
601 acgccccgca gttccctgtt tcccagatct cggtgtgggt cccggaaaat gcacctgtaa
661 acacccgact ggccatagag catcctgctg tggacccaga tgtaggcatt aatggggtac
721 agacctatcg cttactggac taccatggta tgttcaccct ggacgtggag gagaatgaga
781 atggggagcg caccccctac ctaattgtca tgggtgcttt ggacagggaa acccaggacc
841 agtatgtgag catcatcata gctgaggatg gtgggtctcc accacttttg ggcagtgcca
901 ctctcaccat tggcatcagt gacattaatg acaattgccc tctcttcaca gactcacaaa
961 tcaatgtcac tgtgtatggg aatgctacag tgggcacccc aattgcagct gtccaggctg
1021 tggataaaga cttggggacc aatgctcaaa ttacttattc ttacagtcag aaagttccac
1081 aagcatctaa ggatttattt cacctggatg aaaacactgg agtcattaaa cttttcagta
1141 agattggagg aagtgttctg gagtcccaca agctcaccat ccttgctaat ggaccaggct
1201 gcatccctgc tgtaatcact gctcttgtgt ccattattaa agttattttc agaccccctg
1261 aaattgtccc tcgttacata gcaaacgaga tagatggtgt ggtttatctg aaagaactgg
1321 aacccgttaa cactcccatt gcgtttttca ccataagaga tccagaaggt aaatacaagg
1381 ttaactgcta cctggatggt gaagggccgt ttaggttatc accttacaaa ccatacaata
1441 atgaatattt actagagacc acaaaaccta tggactatga gctacagcag ttctatgaag
1501 tagctgtggt ggcttggaac tctgagggat ttcatgtcaa aagggtcatt aaaatgcaac
1561 ttttagatga caatgataat gctccaattt tccttcaacc cttaatagaa ctaaccatcg
1621 aagagaacaa ctcacccaat gcctttttga ctaagctgta tgctacagat gccgacagcg
1681 aggagagagg ccaagtttca tattttctgg gacctgatgc tccatcatat ttttccttag
1741 acagtgtcac aggaattctg acagtttcta ctcagctgga ccgagaagag aaagaaaagt
1801 acagatacac tgtcagagct gttgactgtg ggaagccacc cagagaatca gtagccactg
1861 tggccctcac agtgttggat aaaaatgaca acagtcctcg gtttatcaac aaggacttca
1921 gcttttttgt gcctgaaaac tttccaggct atggtgagat tggagtaatt agtgtaacag
1981 atgctgacgc tggacgaaat ggatgggtcg ccctctctgt ggtgaaccag agtgatattt
2041 ttgtcataga tacaggaaag ggtatgctga gggctaaagt ctctttggac agagagcagc
2101 aaagctccta tactttgtgg gttgaagctg ttgatggggg tgagcctgcc ctctcctcta
2161 cagcaaaaat cacaattctc cttctagata tcaatgacaa ccctcctctt gttttgtttc
2221 ctcagtctaa tatgtcttat ctgttagtac tgccttctac tctgccaggc tccccggtta
2281 cagaagtcta tgctgtcgac aaagacacag gcatgaatgc tgtcatagct tacagcatca
2341 tagggagaag aggtcctagg cctgagtcct tcaggattga ccctaaaact ggcaacatta
2401 ctttggaaga ggcattgctg cagacagatt atgggctcca tcgcttactg gtgaaagtga
2461 gtgatcatgg ttatcccgag cctctccact ccacagtcat ggtgaaccta tttgtcaatg
2521 acactgtcag taatgagagt tacattgaga gtcttttaag aaaagaacca gagattaata
2581 tagaggagaa agaaccacaa atctcaatag aaccgactca taggaaggta gaatctgtgt
2641 cttgtatgcc caccttagta gctctgtctg taataagctt gggttccatc acactggtca
2701 cagggatggg catatacatc tgtttaagga aaggggaaaa gcatcccagg gaagatgaaa
2761 attcggaagt acagattcca ctgaaaggaa aaattgactt gcatatgcga gagagaaagc
2821 caatggatat ttctaatatt tga
//