LOCUS AK313703 753 bp mRNA linear HTC 24-MAY-2008
DEFINITION Homo sapiens cDNA, FLJ94296, Homo sapiens C-type (calcium
dependent, carbohydrate-recognition domain) lectin, superfamily
member 5 (CLECSF5), mRNA.
ACCESSION AK313703
VERSION AK313703.1
KEYWORDS HTC; HTC_FLI; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 753)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Kaida,T., Tsuchiya,K.,
Iida,Y., Takayama,Y., Murakawa,K., Kanehori,K., Andoh,T.,
Kagawa,N., Sato,R., Kawamura,Y., Tanaka,S., Kisu,Y., Sugano,S.,
Goshima,N., Nomura,N. and Isogai,T.
TITLE NEDO functional analysis of protein and research application
project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC and Biological
Information Research Center (BIRC), AIST; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
The reason of remaining 5'-end "N": This sequence was generated
from 5'-end region of cDNA insert including about 20 base of the
sequence before "N". This cDNA was obtained from oligo-capped cDNA
library by which method 5'-end of mRNA was efficiently cloned.
Therefore remaining 5'-end "N" is important for a detection of
transcription start site of this mRNA.
FEATURES Location/Qualifiers
source 1..753
/cell_type="leukemia cell line (myelogenous)"
/clone="JCMLC1000022"
/clone_lib="JCMLC1"
/db_xref="H-InvDB:HIT000432569"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
CDS 187..753
/note="Homo sapiens C-type (calcium dependent,
carbohydrate-recognition domain) lectin, superfamily
member 5 (CLECSF5), mRNA"
/protein_id="BAG36449.1"
/translation="MNWHMIISGLIVVVLKVVGMTLFLLYFPQIFNKSNDGFTTTRSY
GTVSQIFGSSSPSPNGFITTRSYGTVCPKDWEFYQARCFFLSTSESSWNESRDFCKGK
GSTLAIVNTPEKLKFLQDITDAEKYFIGLIYHREEKRWRWINNSVFNGNVTNQNQNFN
CATIGLTKTFDAASCDISYRRICEKNAK"
BASE COUNT 223 a 168 c 171 g 190 t
ORIGIN
1 ntttcttggg gatgctacca aggcagagac tgtgaagaag gaagaacgtt gcttgggcaa
61 aaggagcata ttctcaggag acggggcccc tgcctgccac accaagcatt aggccaccag
121 gaagaccccc atctgcaagc aagcctagcc ttccagggag aaagaggccc ctgcagctcc
181 ttcatcatga actggcacat gatcatctct gggcttattg tggtagtgct taaagttgtt
241 ggaatgacct tatttctact ttatttccca cagattttta acaaaagtaa cgatggtttc
301 accaccacca ggagctatgg aacagtctca cagatttttg ggagcagttc cccaagtccc
361 aacggcttca ttaccacaag gagctatgga acagtctgcc ccaaagactg ggaattttat
421 caagcaagat gttttttctt atccacttct gaatcatctt ggaatgaaag cagggacttt
481 tgcaaaggaa aaggatccac attggcaatt gtcaacacgc cagagaaact gaagtttctt
541 caggacataa ctgatgctga gaagtatttt attggcttaa tttaccatcg tgaagagaaa
601 aggtggcgtt ggatcaacaa ctctgtgttc aatggcaatg ttaccaatca gaatcagaat
661 ttcaactgtg cgaccattgg cctaacaaag acatttgatg ctgcatcatg tgacatcagc
721 taccgcagga tctgtgagaa gaatgccaaa tga
//