LOCUS AK313394 2382 bp mRNA linear HTC 24-MAY-2008
DEFINITION Homo sapiens cDNA, FLJ93928, highly similar to Homo sapiens PDZ
domain containing ring finger 1 (PDZRN1), mRNA.
ACCESSION AK313394
VERSION AK313394.1
KEYWORDS HTC; HTC_FLI; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2382)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Kaida,T., Tsuchiya,K.,
Iida,Y., Takayama,Y., Murakawa,K., Kanehori,K., Andoh,T.,
Kagawa,N., Sato,R., Kawamura,Y., Tanaka,S., Kisu,Y., Sugano,S.,
Goshima,N., Nomura,N. and Isogai,T.
TITLE NEDO functional analysis of protein and research application
project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC and Biological
Information Research Center (BIRC), AIST; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2382
/clone="TRACH3010368"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000432260"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 310..2382
/note="highly similar to Homo sapiens PDZ domain
containing ring finger 1 (PDZRN1), mRNA"
/protein_id="BAG36192.1"
/translation="MGTTSDEMVSVEQTSSSSLNPLCFECGQQHWTRENHLYNYQNEV
DDDLVCHICLQPLLQPLDTPRGHTFCYKCLRNFLQEKDFCPLDRKRLHFKLCKKSSIL
VHKLLDKLLVLCPFSSVCKDVMQRCDLEAHLKNRCPGASHRRVALERRKTSRTQAEIE
NENGPTLLDPAGTLSPEADCLGTGAVPVERHLTSASLPTWSEEPGLDNPAFEESAGAD
TTQQPLSLPEGEITTIEIHRSNPYIQLGISIVGGNETPLINIVIQEVYRDGVIARDGR
LLAGDQILQVNNYNISNVSHNYARAVLSQPCNTLHLTVLRERRFGNRAHNHSDSNSPR
EEIFQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAING
HDLKYGTPELAAQIIQASGERVNLTIARPGKPQPGNTIREAGNHSSSSQHHTPPPYYS
RPSSHKDLTQCVTCQEKHITVKKEPHESLGMTVAGGRGSKSGELPIFVTSVPPHGCLA
RDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVALKALEVQIVEEATQNAE
EQPSTFSENEYDASWSPSWVMWLGLPSTLHSCHDIVLRRSYLGSWGFSIVGGYEENHT
NQPFFIKTIVLGTPAYYDGRLKCGDMIVAVNGLSTVGMSHSALVPMLKEQRNKVTLTV
ICWPGSLV"
BASE COUNT 641 a 556 c 629 g 556 t
ORIGIN
1 aaggcagcag gggcggttga gaagtgaagt cttggccgga gtttgctttt tgccaggaaa
61 tccgcggcgg cggcggcggc ggcggcgatt cctggcggag cggagccggg caggctctcc
121 gctccctcag cgggccgcgg agagcgggag ctggtgccga gcagcggcgc caggagcccg
181 tgcgcggccc gggcagccgc gctttcccaa aaaacacacc ttgactttag tcagatacat
241 cactgtctgt taaaggaaac caagcgtgaa gtggaagtct aacacatgag gatacagaat
301 tgattcaaaa tgggaacaac aagtgatgag atggtgtctg tggaacagac ctcctcctct
361 tctctaaacc ccctgtgttt tgaatgtggc caacagcact ggacaagaga aaaccatttg
421 tacaattacc agaatgaagt ggatgatgac ctagtctgcc atatttgcct tcaacctctg
481 ctgcagccac tagacacacc ccgtggacat acattctgct acaagtgcct cagaaacttt
541 ttacaagaga aagatttctg tccgttggac cggaaaagac ttcattttaa gttgtgcaag
601 aagtctagta ttctagttca taaactccta gacaaattat tagttttatg tccattttct
661 tcagtgtgca aagatgtaat gcaacgttgt gatctggagg cacatctcaa aaacagatgt
721 cctggagctt ctcatcggag agttgccctg gagagaagga aaactagtag aactcaagca
781 gagattgaga atgaaaatgg gcccactcta ctagatcctg caggtacctt atctccagaa
841 gcagactgtt tggggacagg cgcagtgcct gtggagcggc acttgacatc agcgtctctt
901 cccacatgga gtgaggagcc tggccttgac aaccctgcct ttgaggagag cgctggagct
961 gacaccacac aacagccact tagtttacca gaaggagaaa tcaccacgat tgaaattcat
1021 cggtccaatc cttacattca gttaggaatc agcattgtgg gtggcaacga aacacctttg
1081 attaacattg tcatccagga ggtctatcgg gatggggtca ttgccagaga cgggagactt
1141 cttgctggag accagattct tcaggtcaac aactacaata tcagcaatgt gtcccataac
1201 tatgcccgag ctgtcctttc ccagccctgc aacacactgc atcttactgt gcttcgagag
1261 aggcgctttg gcaaccgagc acacaaccat tctgatagta actctccacg agaagagatt
1321 ttccaagtgg ctcttcataa acgggactct ggtgaacagc ttggcattaa attggtgcga
1381 aggacagatg agccaggggt ttttattctt gacctgttgg aaggggggtt ggctgcccag
1441 gacggcaggc taagcagcaa tgaccgagtg ctggccatca atgggcacga cctgaagtat
1501 ggaactccgg agcttgctgc ccagattatt caggccagtg gagagagagt gaatttaaca
1561 attgctagac cagggaaacc ccagcctggt aacaccatta gagaagcagg aaatcatagc
1621 agcagcagcc agcaccacac accaccaccg tattatagca gaccaagctc acataaggat
1681 cttactcagt gtgttacatg ccaagaaaaa cacattactg taaagaagga accacatgaa
1741 tcccttggca tgaccgttgc tgggggcagg ggaagtaaga gtggtgagct gcccatcttt
1801 gtgaccagtg tgccacccca tggctgcctt gcacgagatg gcagaataaa gagaggtgat
1861 gtgttgctaa atatcaacgg cattgatttg accaatttaa gtcacagtga ggcagttgca
1921 atgctgaaag ccagtgccgc gtcccctgct gttgccctta aagcacttga ggtccagatt
1981 gttgaggagg cgactcagaa cgcggaggag cagccgagta ctttcagcga aaatgagtat
2041 gatgccagtt ggtccccatc atgggtcatg tggcttgggc ttcccagcac acttcatagc
2101 tgccacgata tagttttacg aagaagttac ttgggaagtt ggggctttag tatcgttggt
2161 ggatatgaag agaaccacac caatcagcct tttttcatta aaactattgt cttgggaact
2221 cctgcttatt atgatggaag attaaagtgt ggtgacatga ttgtggccgt aaatgggctg
2281 tcaaccgtgg gcatgagcca ctctgcacta gttcccatgt tgaaggagca gaggaacaaa
2341 gtcactctga ccgttatttg ttggcctggc agccttgtat ag
//