LOCUS AK312807 2832 bp mRNA linear HTC 24-MAY-2008 DEFINITION Homo sapiens cDNA, FLJ93236, highly similar to Homo sapiens nuclear cap binding protein subunit 1, 80kDa (NCBP1),mRNA. ACCESSION AK312807 VERSION AK312807.1 KEYWORDS HTC; HTC_FLI; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2832) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Kaida,T., Tsuchiya,K., Iida,Y., Takayama,Y., Murakawa,K., Kanehori,K., Andoh,T., Kagawa,N., Sato,R., Kawamura,Y., Tanaka,S., Kisu,Y., Sugano,S., Goshima,N., Nomura,N. and Isogai,T. TITLE NEDO functional analysis of protein and research application project JOURNAL Unpublished (2008) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC and Biological Information Research Center (BIRC), AIST; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. The reason of remaining 5'-end "N": This sequence was generated from 5'-end region of cDNA insert including about 20 base of the sequence before "N". This cDNA was obtained from oligo-capped cDNA library by which method 5'-end of mRNA was efficiently cloned. Therefore remaining 5'-end "N" is important for a detection of transcription start site of this mRNA. FEATURES Location/Qualifiers source 1..2832 /clone="TESTI4024374" /clone_lib="TESTI4" /db_xref="H-InvDB:HIT000431673" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="testis" CDS 460..2832 /note="highly similar to Homo sapiens nuclear cap binding protein subunit 1, 80kDa (NCBP1),mRNA" /protein_id="BAG35665.1" /translation="MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSAC SLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLSEKLTIYTTLVGLLNARNYNFGG EFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEED VPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWT ADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPH TEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAA QLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLA QATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVR EVLEKCMRLSYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAF KSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSAL AKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIF SSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRGDDDDRSSD RKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWY KNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA" BASE COUNT 781 a 651 c 693 g 706 t ORIGIN 1 nttgagaggc caccgggaaa ccattgagaa gccccggagg accggcctga gcggaggcgg 61 agactagagc ggccgccggc acgacccgcc ttcaggcgta cgacgaccgc ggcccggggg 121 ctctgagtgg ccaaagcggc ggcactttct gcgtggcccc ggaaggacat agagcggaag 181 gcgggagaaa gaagtagccg gcaggcggag gcagcccgag ggggcggttg catttgtgcc 241 agacgttcgt agcccactga gcttcctcac gccggctgtc gcagcgccta gccccacccg 301 gcggcctctc ctgcgcttcc ggggccgtgg cgagctagtg cgcctgcgtg ccggcccatc 361 cgcgcgcctt gcagctgtcc ttgcgtcggc cagcggccag acagttcctg cagcgcttac 421 cgcctggcct ctcggttccg cggcgcaccg gagggcagca tgtcgcggcg gcggcacagc 481 gacgagaacg acggtgggca gcctcacaaa aggagaaaga cctctgatgc aaatgaaact 541 gaagatcatt tggaatcttt aatatgtaaa gtaggagaaa agagtgcctg ctctttggag 601 agcaacctag aaggcttggc tggtgttttg gaagctgatc ttcctaacta caagagcaag 661 atcttaaggc ttctttgtac agttgcacgc ctattatctg agaagctgac aatttataca 721 acattagttg gactactgaa tgccaggaat tacaattttg gtggagaatt tgtagaagcc 781 atgattcgtc aacttaaaga atcattgaaa gcaaacaatt ataatgaagc cgtgtatttg 841 gtccgttttt tatctgatct tgtgaattgt catgtgattg ccgccccatc aatggttgct 901 atgtttgaaa attttgtaag cgtaactcag gaagaagatg tacctcaggt gcgacgagat 961 tggtatgtgt atgcatttct gtcatctttg ccctgggttg gaaaggagtt gtacgaaaag 1021 aaagatgcag agatggaccg catctttgcc aacactgaaa gctatcttaa aagacgccaa 1081 aagactcatg tacccatgtt acaggtatgg actgctgata aaccacatcc acaagaagag 1141 tatttagatt gcctgtgggc ccagattcag aaattgaaaa aggatcgctg gcaggaacgg 1201 cacatcctaa gaccttatct tgcctttgac agcatcctgt gtgaagcact gcagcacaat 1261 ctgcctcctt ttacaccacc tcctcacact gaagattcag tgtacccaat gccaagggtc 1321 atcttcagaa tgtttgatta cacagatgat cccgagggtc ctgtcatgcc agggagtcat 1381 tcagtggaaa gatttgtaat agaagagaat cttcactgca tcattaagtc ccactggaag 1441 gaaaggaaga cttgtgctgc acagttagtg agctatccag ggaagaacaa gatccccttg 1501 aactaccaca tagttgaggt gatctttgca gagctgtttc aacttccagc accccctcac 1561 attgatgtga tgtacacaac actcctcatt gaactgtgca aacttcaacc tggctctcta 1621 ccccaagttc ttgcacaggc aactgaaatg ctatacatgc gtttggacac aatgaacact 1681 acctgtgtag acaggtttat taattggttt tctcatcatc taagtaactt ccagttccgt 1741 tggagctggg aagattggtc agattgtctt agtcaagatc ctgaaagtcc caaaccgaag 1801 tttgtaagag aagttctaga aaaatgtatg aggttgtctt accatcagcg tatattagat 1861 attgttcctc ctaccttctc agctctgtgt cctgcaaacc caacctgcat ttacaagtat 1921 ggagatgaaa gtagcaattc tcttcctgga cattctgttg ccctctgttt agctgttgcc 1981 tttaaaagta aggcaaccaa tgatgaaatc ttcagcattc tgaaagatgt accaaatcct 2041 aaccaggatg atgacgacga tgaaggattc agttttaacc cattgaaaat agaagtcttt 2101 gtacagactc tgctacactt ggcagccaaa tcattcagcc actccttcag tgctcttgca 2161 aagtttcatg aagtcttcaa aaccctagct gaaagtgatg aaggaaagtt acatgtgcta 2221 agagttatgt ttgaggtctg gaggaaccat ccacagatga ttgctgtact agtggataag 2281 atgattcgta cacaaatagt tgattgtgct gccgtagcaa attggatctt ctcttcagaa 2341 ctatctcgtg actttaccag attgtttgtt tgggaaattt tgcactctac aattcgtaag 2401 atgaacaaac atgtcctgaa gatccagaaa gagctggaag aagctaaaga gaaacttgct 2461 aggcaacaca aacggcgagg tgatgatgac gacagaagca gtgacaggaa agacggggtt 2521 cttgaggaac aaatagaacg acttcaggaa aaagtggaat ctgctcagag tgaacaaaag 2581 aatcttttcc tcgttatatt tcagcggttt atcatgatct tgaccgagca cctagtacga 2641 tgcgaaactg atgggaccag tgtattaaca ccatggtata agaactgtat agagaggctg 2701 cagcagatct tcctacagca tcaccaaata atccagcagt acatggtgac cctggagaac 2761 cttctcttca ctgctgaatt agaccctcat atcttggccg tgttccagca gttctgtgcc 2821 ctgcaggcct aa //