LOCUS AK312794 2596 bp mRNA linear HTC 24-MAY-2008
DEFINITION Homo sapiens cDNA, FLJ93213, highly similar to Homo sapiens
protocadherin beta 15 (PCDHB15), mRNA.
ACCESSION AK312794
VERSION AK312794.1
KEYWORDS HTC; HTC_FLI; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2596)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Kaida,T., Tsuchiya,K.,
Iida,Y., Takayama,Y., Murakawa,K., Kanehori,K., Andoh,T.,
Kagawa,N., Sato,R., Kawamura,Y., Tanaka,S., Kisu,Y., Sugano,S.,
Goshima,N., Nomura,N. and Isogai,T.
TITLE NEDO functional analysis of protein and research application
project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC and Biological
Information Research Center (BIRC), AIST; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2596
/clone="TESTI4007114"
/clone_lib="TESTI4"
/db_xref="H-InvDB:HIT000431660"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 233..2596
/note="highly similar to Homo sapiens protocadherin beta
15 (PCDHB15), mRNA"
/protein_id="BAG35655.1"
/translation="MEPAGERFPEQRQVLILLLLLEVTLAGWEPRRYSVMEETERGSF
VANLANDLGLGVGELAERGARVVSEDNEQGLQLDLQTGQLILNEKLDREKLCGPTEPC
IMHFQVLLKKPLEVFRAELPVTDINDHSPEFPEREMTLKIPETSSLGTVFPLKKARDL
DVGSNNVQNYNISPNSHFHVSTRTRGDGRKYPELVLDTELDREEQAELRLTLTAVDGG
SPPRSGTVQILILVLDANDNAPEFVQALYEVQVPENSPVGSLVVKVSARDLDTGTNGE
ISYSLYYSSQEIDKPFELSSLSGEIRLIKKLDFETMSSYDLDIEASDGGGLSGKCSVS
VKVLDVNDNFPELSISSLTSPIPENSPETEVALFRIRDRDSGENGKMICSIQDDVPFK
LKPSVENFYRLVTEGALDRETRAEYNITITITDLGTPRLKTEQSITVLVSDVNDNAPA
FTQTSYTLFVRENNSPALHIGSVRATDRDSGTNAQVTYSLLPPQDPHLPLTSLVSINT
DNGHLFALQSLDYEALQAFEFRVGATDRGFPALSSEALVRVLVLDANDNSPFVLYPLQ
NGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEV
RTARLLSERDVAKHRLVVLVKDNGEPPRSATATLQVLLVDGFSQPYLPLPEAAPAQAQ
ADSLTVYLVVALASVSSLFLFSVFLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVS
GTGTLSQSYQYEVCLTGGSESNDFKFLKPIFPNIVSQDSRRKSEFLE"
BASE COUNT 606 a 719 c 718 g 553 t
ORIGIN
1 aaaaaaaagg aaaaggaaaa agcccatgaa atgctactag ctacttcaga cctctttcag
61 cctaagagga aagcctgtta gcagagcact ggaccagtgt ctccggagaa tgctattctc
121 ctacatttcc gaacaggtta tcaacgcaca gatcgatcac tgcctctgtc ccatcgctcc
181 ctgaagtagc tctgactccg gttccttgaa aggggcgtgt acagaagtaa agatggagcc
241 tgcaggggag cgctttcccg aacaaaggca agtcctgatt ctccttcttt tactggaagt
301 gactctggca ggctgggaac cccgtcgcta ttctgtgatg gaggaaacag agagaggttc
361 ttttgtagcc aacctggcca atgacctagg gctgggagtg ggggagctag ccgagcgggg
421 agcccgggta gtttctgagg ataacgaaca aggcttgcag cttgatctgc agaccgggca
481 gttgatatta aatgagaagc tggaccggga gaagctgtgt ggccctactg agccctgtat
541 aatgcatttc caagtgttac tgaaaaaacc tttggaagta tttcgagctg aactaccagt
601 gacagacata aacgatcatt ctcctgagtt tcctgaaaga gaaatgaccc tgaaaatccc
661 agaaactagc tcccttggga ctgtgtttcc tctgaaaaaa gctcgggact tggacgtggg
721 cagcaataat gttcaaaact acaatatttc tcccaattct catttccatg tttccactcg
781 cacccgaggg gatggcagga aatacccaga gctggtgctg gacacagaac tggatcgcga
841 ggagcaggcc gagctcagat taaccttgac agcggtggac ggtggctctc caccccgatc
901 tggcaccgtc cagatcctca tcttggtctt ggacgccaat gacaatgccc cggagtttgt
961 gcaggcgctc tacgaggtgc aggtcccaga gaacagccca gtaggctccc tagttgtcaa
1021 ggtctctgct agggatttag acactgggac aaatggagag atatcatact ccctttatta
1081 cagctctcag gagatagaca aaccttttga gctaagcagc ctttcaggag aaattcgact
1141 aattaaaaaa ctagattttg agacaatgtc ttcgtatgat ctagatatag aggcatctga
1201 tggcggggga ctttctggaa aatgctctgt ctctgttaag gtgctggatg ttaacgataa
1261 cttcccggaa ctaagtattt catcacttac cagccctatt cccgagaatt ctccagagac
1321 agaagtggcc ctgtttagga ttagagaccg agactctggg gaaaatggaa aaatgatttg
1381 ctcaattcag gatgatgttc cttttaagct aaaaccttct gttgagaatt tctacaggct
1441 ggtaacagaa ggggcgctgg acagagagac cagagccgag tacaacatca ccatcaccat
1501 cacagacttg gggactccaa ggctgaaaac cgagcagagc ataaccgtgc tggtgtcgga
1561 cgtcaatgac aacgcccccg ccttcaccca aacctcctac accctgttcg tccgcgagaa
1621 caacagcccc gccctgcaca tcggcagtgt ccgcgcaaca gacagagact cgggcaccaa
1681 cgcccaggtc acctactcgc tgctgccgcc ccaggacccg cacctgcccc tcacctccct
1741 ggtctccatt aacacggaca acggccacct gttcgctctc cagtcgctgg actacgaggc
1801 cctgcaggct ttcgagttcc gcgtgggcgc cacagaccgc ggcttcccgg cgctgagcag
1861 cgaggcgctg gtgcgagtgc tggtgctgga cgccaacgac aactcgccct tcgtgctgta
1921 cccgctgcag aacggctccg cgccctgcac cgagctggtg ccccgggcgg ccgagccggg
1981 ctacctggtg accaaggtgg tggcggtgga cggcgactcg ggccagaacg cctggctgtc
2041 gtaccagctg ctcaaggcca cggagcccgg gctgttcggc gtgtgggcgc acaatggcga
2101 ggtgcgcacc gccaggctgc tgagcgagcg cgacgtggcc aagcacaggc tagtggtgct
2161 ggtcaaggac aatggcgagc ctccgcgctc ggccaccgcc acgctgcaag tgctcctggt
2221 ggacggcttc tctcagccct acctgccgct cccagaggcg gccccggccc aggcccaggc
2281 cgactcgctt accgtctacc tggtggtggc attggcctcg gtgtcttcgc tcttcctctt
2341 ctcggtgttc ctgttcgtgg cagtgcggct gtgcaggagg agcagggcgg cctcagtggg
2401 tcgctgctcg gtgcccgagg gcccctttcc agggcatctg gtggacgtga gcggcaccgg
2461 gaccctttcc cagagctacc agtacgaggt gtgtctgacg ggaggctctg aaagtaatga
2521 tttcaagttc ttgaagccta tattcccaaa tattgtaagc caggactcta ggaggaaatc
2581 agaatttcta gaataa
//