LOCUS AK312554 2567 bp mRNA linear HTC 24-MAY-2008
DEFINITION Homo sapiens cDNA, FLJ92927, highly similar to Homo sapiens
cadherin 3, type 1, P-cadherin (placental) (CDH3),mRNA.
ACCESSION AK312554
VERSION AK312554.1
KEYWORDS HTC; HTC_FLI; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2567)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Kaida,T., Tsuchiya,K.,
Iida,Y., Takayama,Y., Murakawa,K., Kanehori,K., Andoh,T.,
Kagawa,N., Sato,R., Kawamura,Y., Tanaka,S., Kisu,Y., Sugano,S.,
Goshima,N., Nomura,N. and Isogai,T.
TITLE NEDO functional analysis of protein and research application
project
JOURNAL Unpublished (2008)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC and Biological
Information Research Center (BIRC), AIST; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2567
/clone="CTONG3006481"
/clone_lib="CTONG3"
/db_xref="H-InvDB:HIT000431420"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="tongue, tumor tissue"
CDS 78..2567
/note="highly similar to Homo sapiens cadherin 3, type 1,
P-cadherin (placental) (CDH3),mRNA"
/protein_id="BAG35451.1"
/translation="MGLPRGPLASLLLLQVCWLQCAASEPCRAVFREAEVTLEAGGAE
QEPGQALGKVFMGCPGQEPALFSTDNDDFTVRNGETVQERRSLKERNPLKIFPSKRIL
RRHKRDWVVAPISVPENGKGPFPQRLNQLKSNKDRDTKIFYSITGPGADSPPEGVFAV
EKETGWLLLNKPLDREEIAKYELFGHAVSENGASVEDPMNISIIVTDQNDHKPKFTQD
TFRGSVLEGVLPGTSVMQVTATDEDDAIYTYNGVVAYSIHSQEPKDPHDLMFTIHRST
GTISVISSGLDREKVPEYTLTIQATDMDGDGSTTTAVAVVEILDANDNAPMFDPQKYE
AHVPENAVGHEVQRLTVTDLDAPNSPAWRATYLIMGGDDGDHFTITTHPESNQGILTT
RKGLDFEAKNQHTLYVEVTNEAPFVLKLPTSTATIVVHVEDVNEAPVFVPPSKVVEVQ
EGIPTGEPVCVYTAEDPDKENQKISYRILRDPAGWLAMDPDSGQVTAVGTLDREDEQF
VRNNIYEVMVLAMDNGSPPTTGTGTLLLTLIDVNDHGPVPEPRQITICNQSPVRHVLN
ITDKDLSPHTSPFQAQLTDDSDIYWTAEVNEEGDTVVLSLKKFLKQDTYDVHLSLSDH
GNKEQLTVIRATVCDCHGHVETCPGPWKGGFILPVLGAVLALLFLLLVLLLLVRKKRK
IKEPLLLPEDDTRDNVFYYGEEGGGEEDQDYDITQLHRGLEARPEVVLRNDVAPTIIP
TPMYRPRPANPDEIGNFIIENLKAANTDPTAPPYDTLLVFDYEGSGSDAASLSSLTSS
ASDQDQDYDYLNEWGSRFKKLADMYGGGEDD"
BASE COUNT 616 a 751 c 714 g 486 t
ORIGIN
1 ggtgctcaaa ggggcaagag ctgagcggaa caccggcccg ccgtcgcggc agctgcttca
61 cccctctctc tgcagccatg gggctccctc gtggacctct cgcgtctctc ctccttctcc
121 aggtttgctg gctgcagtgc gcggcctccg agccgtgccg ggcggtcttc agggaggctg
181 aagtgacctt ggaggcggga ggcgcggagc aggagcccgg ccaggcgctg gggaaagtat
241 tcatgggctg ccctgggcaa gagccagctc tgtttagcac tgataatgat gacttcactg
301 tgcggaatgg cgagacagtc caggaaagaa ggtcactgaa ggaaaggaat ccattgaaga
361 tcttcccatc caaacgtatc ttacgaagac acaagagaga ttgggtggtt gctccaatat
421 ctgtccctga aaatggcaag ggtcccttcc cccagagact gaatcagctc aagtctaata
481 aagatagaga caccaagatt ttctacagca tcacggggcc gggggcagac agcccccctg
541 agggtgtctt cgctgtagag aaggagacag gctggttgtt gttgaataag ccactggacc
601 gggaggagat tgccaagtat gagctctttg gccacgctgt gtcagagaat ggtgcctcag
661 tggaggaccc catgaacatc tccatcatcg tgaccgacca gaatgaccac aagcccaagt
721 ttacccagga caccttccga gggagtgtct tagagggagt cctaccaggt acttctgtga
781 tgcaggtgac agccacagat gaggatgatg ccatctacac ctacaatggg gtggttgctt
841 actccatcca tagccaagaa ccaaaggacc cacacgacct catgttcaca attcaccgga
901 gcacaggcac catcagcgtc atctccagtg gcctggaccg ggaaaaagtc cctgagtaca
961 cactgaccat ccaggccaca gacatggatg gggacggctc caccaccacg gcagtggcag
1021 tagtggagat ccttgatgcc aatgacaatg ctcccatgtt tgacccccag aagtacgagg
1081 cccatgtgcc tgagaatgca gtgggccatg aggtgcagag gctgacggtc actgatctgg
1141 acgcccccaa ctcaccagcg tggcgtgcca cctaccttat catgggcggt gacgacgggg
1201 accattttac catcaccacc caccctgaga gcaaccaggg catcctgaca accaggaagg
1261 gtttggattt tgaggccaaa aaccagcaca ccctgtacgt tgaagtgacc aacgaggccc
1321 cttttgtgct gaagctccca acctccacag ccaccatagt ggtccacgtg gaggatgtga
1381 atgaggcacc tgtgtttgtc ccaccctcca aagtcgttga ggtccaggag ggcatcccca
1441 ctggggagcc tgtgtgtgtc tacactgcag aagaccctga caaggagaat caaaagatca
1501 gctaccgcat cctgagagac ccagcagggt ggctagccat ggacccagac agtgggcagg
1561 tcacagctgt gggcaccctc gaccgtgagg atgagcagtt tgtgaggaac aacatctatg
1621 aagtcatggt cttggccatg gacaatggaa gccctcccac cactggcacg ggaacccttc
1681 tgctaacact gattgatgtc aacgaccatg gcccagtccc tgagccccgt cagatcacca
1741 tctgcaacca aagccctgtg cgccacgtgc tgaacatcac ggacaaggac ctgtctcccc
1801 acacctcccc tttccaggcc cagctcacag atgactcaga catctactgg acggcagagg
1861 tcaacgagga aggtgacaca gtggtcttgt ccctgaagaa gttcctgaag caggatacat
1921 atgacgtgca cctttctctg tctgaccatg gcaacaaaga gcagctgacg gtgatcaggg
1981 ccactgtgtg cgactgccat ggccatgtcg aaacctgccc tggaccctgg aaaggaggtt
2041 tcatcctccc tgtgctgggg gctgtcctgg ctctgctgtt cctcctgctg gtgctgcttt
2101 tgttggtgag aaagaagcgg aagatcaagg agcccctcct actcccagaa gatgacaccc
2161 gtgacaacgt cttctactat ggcgaagagg ggggtggcga agaggaccag gactatgaca
2221 tcacccagct ccaccgaggt ctggaggcca ggccggaggt ggttctccgc aatgacgtgg
2281 caccaaccat catcccgaca cccatgtacc gtcctaggcc agccaaccca gatgaaatcg
2341 gcaactttat aattgagaac ctgaaggcgg ctaacacaga ccccacagcc ccgccctacg
2401 acaccctctt ggtgttcgac tatgagggca gcggctccga cgccgcgtcc ctgagctccc
2461 tcacctcctc cgcctccgac caagaccaag attacgatta tctgaacgag tggggcagcc
2521 gcttcaagaa gctggcagac atgtacggtg gcggggagga cgactag
//