LOCUS AK304812 2299 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ59658 complete cds, highly similar to Homo
sapiens rhomboid family 1 (Drosophila) (RHBDF1), mRNA.
ACCESSION AK304812
VERSION AK304812.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2299)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2299
/clone="UTERU3016083"
/clone_lib="UTERU3"
/db_xref="H-InvDB:HIT000499436"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="uterus"
CDS 147..1955
/codon_start=1
/note="highly similar to Homo sapiens rhomboid family 1
(Drosophila) (RHBDF1), mRNA"
/protein_id="BAG65562.1"
/transl_table=1
/translation="MSEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQVGPGL
QGLWVPPVQYPHHDPVAQPLRRQAFLRSVSMPAETAHISSPHHELRRPVLQRQTSITQ
TIRRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTST
ETPPPLYVGPCQLGMQKIIDPLARGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSS
RSGFHRLPRRRKRESVAKMSFRAAAALMKGRSVRDGTFRRAQRRSFTPASFLEEDTTD
FPDELDTSFFAREGILHEELSTYPDEVFESPSEAALKDWEKAPEQADLTGGALDRSEL
ERSHLMLPLERGWRKQKEGAAAPQPKVRLRQEVVSTAGPRRGQRIAVPVRKLFAREKR
PYGLGMVGRLTNRTYRKRIDSFVKRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGI
APVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSVRTGLGAGPAGAGPGGARRG
QEAPDCGRSSPSPAGGPHPPGRQVFALHAPGPAGAQLHSLGARAREALRLLRAQRQVG
LRADLGGGVLGAFPRPGLPPSSARCSLFRPQIDSAE"
BASE COUNT 414 a 778 c 699 g 408 t
ORIGIN
1 attcccgggc gggccggacc ggcgggcggg cggggactcg gcgcgggcgc cctcccggcc
61 agcggcggca gcccctcctc cccggcgccc tcaggacccc ccagagaccc ccggcggcgg
121 cagcctgcct tgctctgcca ggaaccatga gtgaggcccg cagggacagc acgagcagcc
181 tgcagcgcaa gaagccaccc tggctaaagc tggacattcc ctctgcggtg cccctgacgg
241 cagaagagcc cagcttcctg caggtaggcc ctggcctgca gggactgtgg gtgccccctg
301 tccagtaccc tcaccatgac cctgttgccc agcccctgag gcgacaggct ttcctgagga
361 gtgtgagtat gccagccgag acagcccaca tctcttcacc ccaccatgag ctccggcggc
421 cggtgctgca acgccagacg tccatcacac agaccatccg cagggggacc gccgactggt
481 ttggagtgag caaggacagt gacagcaccc agaaatggca gcgcaagagc atccgtcact
541 gcagccagcg ctacgggaag ctgaagcccc aggtcctccg ggagctggac ctgcccagcc
601 aggacaacgt gtcgctgacc agcaccgaga cgccaccccc actctacgtg gggccatgcc
661 agctgggcat gcagaagatc atagaccccc tggcccgtgg ccgtgccttc cgtgtggcag
721 atgacactgc ggaaggcctg agtgccccac acactcccgt cacgccgggt gctgcctccc
781 tctgctcctt ctccagctcc cgctcaggtt tccaccggct cccgcggcgg cgcaagcgag
841 agtcggtggc caagatgagc ttccgggcgg ccgcagcgct gatgaaaggc cgctccgtta
901 gggatggcac ctttcgccgg gcacagcgtc gaagcttcac tccagctagc tttctggagg
961 aggacacaac tgatttcccc gatgagctgg acacatcctt ctttgcccgg gaaggtatcc
1021 tccatgaaga gctgtccaca tacccggatg aagttttcga gtccccatcg gaggcagcgc
1081 taaaggactg ggagaaggca ccggagcagg cggacctcac cggcggggcc ctggaccgca
1141 gcgagcttga gcgcagccac ctgatgctgc ccttggagcg aggctggcgg aagcagaagg
1201 agggcgccgc agccccgcag cccaaggtgc ggctccgaca ggaggtggtg agcaccgcgg
1261 ggccgcgacg gggccagcgt atcgcggtgc cggtgcgcaa gctcttcgcc cgggagaagc
1321 ggccgtatgg gctgggcatg gtgggacggc tcaccaaccg cacctaccgc aagcgcatcg
1381 acagcttcgt caagcgccag atcgaggaca tggacgacca caggcccttc ttcacctact
1441 ggcttacctt cgtgcactcg ctcgtcacca tcctagccgt gtgcatctat ggcatcgcgc
1501 ccgtgggctt ctcgcagcat gagacggtgg actcggtgct gcggaaccgc ggggtctacg
1561 agaacgtcaa gtacgtgcag caggagaact tctggatcgg gcccagctcg gtgaggacgg
1621 ggctgggggc ggggccggcg ggggcgggac ctggaggtgc ccggcggggg caggaggccc
1681 cggactgcgg ccgctcgtct ccctcgcccg caggaggccc tcatccacct gggcgccaag
1741 ttttcgccct gcatgcgcca ggacccgcag gtgcacagct tcattcgctc ggcgcgcgag
1801 cgcgagaagc actccgcctg ctgcgtgcgc aacgacaggt cgggctgcgt gcagacctcg
1861 gaggaggagt gctcggtgcg tttccccgcc cgggactccc gccttcgtct gcccggtgtt
1921 cgctcttcag acctcagata gactcggcag agtgatcctt cgccctcgtt cctggcacat
1981 cccgccgtcc ttacgcgcaa ggccttgtca tattcattcc tcctcatccc caccctcccc
2041 catctccagc tcctcgcccc gtagaccatc atctgatttg gtcttttgat ttgggtgtac
2101 tcttccagca tgtgtcttaa agcttacata agtggtattt gcctcttttc cactaagcaa
2161 tttttaaaaa aattcatccc aactttcatc acatcatctt atgtggaagt gccgtagtcc
2221 ataccagttc cctgatttag gacacagagg ttgtttctga ttttcagcta acaggaatta
2281 tgccgtcaaa ctccttgta
//