LOCUS AK304797 1871 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60400 complete cds, highly similar to Homo
sapiens rhomboid family 1 (Drosophila) (RHBDF1), mRNA.
ACCESSION AK304797
VERSION AK304797.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1871)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1871
/clone="UTERU3014029"
/clone_lib="UTERU3"
/db_xref="H-InvDB:HIT000499421"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="uterus"
CDS 125..1864
/codon_start=1
/note="highly similar to Homo sapiens rhomboid family 1
(Drosophila) (RHBDF1), mRNA"
/protein_id="BAG65547.1"
/transl_table=1
/translation="MSEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQPLRRQ
AFLRSVSMPAETAHISSPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQ
RKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQKIIDPLA
RGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRESVAKMSFRA
AAALMKGRSVRDGTFRRAQRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTY
PDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAP
QPKVRLRQEVVSTAGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSFV
KRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYEN
VKYVQQENFWIGPSSVRTGLGAGPAGAGPGGARRGQEAPDCGRSSPSPAGGPHPPGRQ
VFALHAPGPAGAQLHSLGARAREALRLLRAQRQVGLRADLGGGVLGAFPRLGLPPSSA
RCSLFRPQIDPAE"
BASE COUNT 343 a 618 c 617 g 293 t
ORIGIN
1 atgctcccac cacaggctgg aagcggtggg atgagagttc caactgtggc ctgcagagtg
61 ggctggcggg ctggtccagg acaagagaaa gtggtgccag gcctgccttg ctctgccagg
121 aaccatgagt gaggcccgca gggacagcac gagcagcctg cagcgcaaga agccaccctg
181 gctaaagctg gacattccct ctgcggtgcc cctgacggca gaagagccca gcttcctgca
241 gcccctgagg cgacaggctt tcctgaggag tgtgagtatg ccagccgaga cagcccacat
301 ctcttcaccc caccatgagc tccggcggcc ggtgctgcaa cgccagacgt ccatcacaca
361 gaccatccgc agggggaccg ccgactggtt tggagtgagc aaggacagtg acagcaccca
421 gaaatggcag cgcaagagca tccgtcactg cagccagcgc tacgggaagc tgaagcccca
481 ggtcctccgg gagctggacc tgcccagcca ggacaacgtg tcgctgacca gcaccgagac
541 gccaccccca ctctacgtgg ggccatgcca gctgggcatg cagaagatca tagaccccct
601 ggcccgtggc cgtgccttcc gtgtggcaga tgacactgcg gaaggcctga gtgccccaca
661 cactcccgtc acgccgggtg ctgcctccct ctgctccttc tccagctccc gctcaggttt
721 ccaccggctc ccgcggcggc gcaagcgaga gtcggtggcc aagatgagct tccgggcggc
781 cgcagcgctg atgaaaggcc gctccgttag ggatggcacc tttcgccggg cacagcgtcg
841 aagcttcact ccagctagct ttctggagga ggacacaact gatttccccg atgagctgga
901 cacatccttc tttgcccggg aaggtatcct ccatgaagag ctgtccacat acccggatga
961 agttttcgag tccccatcgg aggcagcgct aaaggactgg gagaaggcac cggagcaggc
1021 ggacctcacc ggcggggccc tggaccgcag cgagcttgag cgcagccacc tgatgctgcc
1081 cttggagcga ggctggcgga agcagaagga gggcgccgca gccccgcagc ccaaggtgcg
1141 gctccgacag gaggtggtga gcaccgcggg gccgcgacgg ggccagcgta tcgcggtgcc
1201 ggtgcgcaag ctcttcgccc gggagaagcg gccgtatggg ctgggcatgg tgggacggct
1261 caccaaccgc acctaccgca agcgcatcga cagcttcgtc aagcgccaga tcgaggacat
1321 ggacgaccac aggcccttct tcacctactg gcttaccttc gtgcactcgc tcgtcaccat
1381 cctagccgtg tgcatctatg gcatcgcgcc cgtgggcttc tcgcagcatg agacggtgga
1441 ctcggtgctg cggaaccgcg gggtctacga gaacgtcaag tacgtgcagc aggagaactt
1501 ctggatcggg cccagctcgg tgaggacggg gctgggggcg gggccggcgg gggcgggacc
1561 tggaggtgcc cggcgggggc aggaggcccc ggactgcggc cgctcgtctc cctcgcccgc
1621 aggaggccct catccacctg ggcgccaagt tttcgccctg catgcgccag gacccgcagg
1681 tgcacagctt cattcgctcg gcgcgcgagc gcgagaagca ctccgcctgc tgcgtgcgca
1741 acgacaggtc gggctgcgtg cagacctcgg aggaggagtg ctcggtgcgt ttccccgcct
1801 gggactcccg ccttcgtctg cccggtgttc gctcttcaga cctcagatag acccggcaga
1861 gtgatccttc g
//