LOCUS AK304431 3887 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ54906 complete cds, highly similar to Homo
sapiens transmembrane channel-like 5 (TMC5), mRNA.
ACCESSION AK304431
VERSION AK304431.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3887)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3887
/clone="TRACH3037320"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000499055"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 705..3725
/codon_start=1
/note="highly similar to Homo sapiens transmembrane
channel-like 5 (TMC5), mRNA"
/protein_id="BAH14182.1"
/transl_table=1
/translation="MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLRTQGYPDVPGPLNN
PDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHP
TSLPEPDYSEFQSHPYHRVSSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLE
PDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPP
FFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFR
HRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAY
GNPPLSECDWHKSPQGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSK
QTHRILQLNCCIQCLNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYF
NFLRWLLKFNIFSFILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFY
TNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGIT
KLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWV
VSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVE
RYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMD
FVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLP
FIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITI
WRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRNLIGSVHFFFILTLI
VLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDMEKKANPSSLVLE
RREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA"
BASE COUNT 1065 a 961 c 884 g 977 t
ORIGIN
1 aacttgggac ctgagttagg ccttcatcgt cgcggactca gtagacagag gccataggtg
61 cagctgtgat ggtagaggtg gaagactgat ttgcattttc accaggtgag acctggttac
121 tcattggttg atgaggaaag agatgatagc cagggcggca taaaacggca atgagctcag
181 taaacaaccc ccttcccgtg atcttcgtgg cttcccgccc agatgtgtga ccaagatagc
241 aaggagcagt ctttaaggcg acacggcaga gaggcagaaa aagatgggcc ttaccggtta
301 gttaagaaaa aaagaggacc tgttgcctgt ccctctagct ttgaactaca aagtggaggg
361 gaagtttgtc tggattttcc tgtagaactg agggcaggac atgaggctct gcctgcagtc
421 agcaacttgg aatattcaga cttcagacca gcatcacaga ttataaccct ccgtaaatca
481 tctgcatccc agctcccatc aaaagccagc ctgaaggacc catggacacg tgactccagt
541 gttctcaaca acatcttaag atcaagttgg tttgcacaac atttgcatct acttgggaca
601 aagcaagaac aataagggca aaaaagtgaa aaaaaaaaaa gatccctgag taattgcaaa
661 tgctgggaca gtttaccact ccagggtgaa gagtccatac caacatgtct gcctactaca
721 ggaataactg gtctgaggaa gacccagatt accctgacta ttcagggtct cagaaccgta
781 cgcaggggta tttgagaact caaggttatc cagatgttcc aggtcctctg aacaatccag
841 actaccccgg caccaggagc aatccatact ctgtagcctc cagaacacgt ccagactatc
901 ctgggtctct ggcagaacca aattatccta gatctctgag taatccagac tattctggca
961 ccagaagcaa tgcatactct gcagcctcta gaacaagccc agaccatcct acctctctac
1021 cagagccaga ttatagtgaa tttcagagtc atccctacca ccgagtatca tccagacaac
1081 cagactaccc tggatctcaa cgaaatcctg attttgcagg ctccagcagc agtggaaact
1141 atgcaggctc cagaacacat ccagatcatt ttggctcctt agaaccggac taccctggag
1201 ctcagagcaa ctctgatcat cctggaccca gagccaattt gaaccatcca ggatccagaa
1261 agaatctgga acatacaagt tttagaatca atccatacgc agactctctg ggaaagcctg
1321 attatccagg cgctgacatt caacctaact ctccaccctt ttttggggag ccagactatc
1381 ccagtgctga ggacaatcag aacttgccaa gcacttggag agaacctgat tattcagatg
1441 ctgagaatgg tcatgattat ggctcttctg agaccccaaa gatgaccagg ggggtgctca
1501 gcagaacatc ttcaatccag ccctcatttc gtcacaggag tgatgacccc gtgggcagtc
1561 tttggggaga gaatgattac cctgaaggca ttgaaatggc atccatggag atggcaaact
1621 catatggcca ctctctgcca ggtgctcctg gaagtggcta tgtgaaccct gcttatgtag
1681 gtgaaagtgg tcctgtccat gcttatggaa acccaccatt gtctgaatgt gattggcaca
1741 agtcacccca aggacagaag ttaatcgcat cccttatacc catgacatcc agagacagaa
1801 ttaaagccat caggaaccag ccaaggacca tggaagagaa aaggaacctt aggaaaatag
1861 ttgacaaaga aaaaagcaaa cagacccatc gtatccttca gctcaattgc tgtattcagt
1921 gtctgaactc catttcccgg gcttatcgga gatccaagaa cagcctgtcg gaaattctga
1981 attccatcag cctgtggcag aagacgctga agatcattgg aggcaagttt ggaaccagcg
2041 tcctctccta tttcaacttt ctgagatggc ttttgaagtt caacattttc tcattcatcc
2101 tgaacttcag cttcatcata atccctcagt ttaccgtggc caaaaagaac accctccagt
2161 tcactgggct ggagtttttc actggggtgg gttattttag ggacacagtg atgtactatg
2221 gcttttacac caattccacc atccagcacg ggaacagcgg ggcatcctac aacatgcagc
2281 tggcctacat cttcacaatc ggagcatgct tgaccacctg cttcttcagt ttgctgttca
2341 gcatggccaa gtatttccgg aacaacttca ttaatcccca catttactcc ggagggatca
2401 ccaagctgat cttttgctgg gacttcactg tcactcatga aaaagctgtg aagctaaaac
2461 agaagaatct tagcactgag ataagggaga acctgtcaga gctccgtcag gagaattcca
2521 agttgacgtt caatcagctg ctgacccgct tctctgccta catggtagcc tgggttgtct
2581 ctacaggagt ggccatagcc tgctgtgcag ccgtttatta cctggctgag tacaacttag
2641 agttcctgaa gacacacagt aaccctgggg cggtgctgtt actgcctttc gttgtgtcct
2701 gcattaatct ggccgtgcca tgcatctact ccatgttcag gcttgtggag aggtacgaga
2761 tgccacggca cgaagtctac gttctcctga tccgaaacat ctttttgaaa atatcaatca
2821 ttggcattct ttgttactat tggctcaaca ccgtggccct gtctggtgaa gagtgttggg
2881 aaaccctcat tggccaggac atctaccggc tccttctgat ggattttgtg ttctctttag
2941 tcaattcctt cctgggggag tttctgagga gaatcattgg gatgcaactg atcacaagtc
3001 ttggccttca ggagtttgac attgccagga acgttctaga actgatctat gcacaaactc
3061 tggtgtggat tggcatcttc ttctgccccc tgctgccctt tatccaaatg attatgcttt
3121 tcatcatgtt ctactccaaa aatatcagcc tgatgatgaa tttccagcct ccgagcaaag
3181 cctggcgggc ctcacagatg atgactttct tcatcttctt gctctttttc ccatccttca
3241 ccggggtctt gtgcaccctg gccatcacca tctggagatt gaagccttca gctgactgtg
3301 gcccttttcg aggtctgcct ctcttcattc actccatcta cagctggatc gacaccctaa
3361 gtacacggcc tggctacctg tgggttgttt ggatctatcg gaacctcatt ggaagtgtgc
3421 acttcttttt catcctcacc ctcattgtgc taatcatcac ctatctttac tggcagatca
3481 cagagggaag gaagattatg ataaggctgc tccatgagca gatcattaat gagggcaaag
3541 ataaaatgtt cctgatagaa aaattgatca agctgcagga tatggagaag aaagcaaacc
3601 ccagctcact tgttctggaa aggagagagg tggagcaaca aggctttttg catttggggg
3661 aacatgatgg cagtcttgac ttgcgatcta gaagatcagt tcaagaaggt aatccaaggg
3721 cctgatgact cttttggtaa ccagacacca atcaaataag gggaggagat gaaaatggaa
3781 tgatttcttc catgccacct gtgcctttag gaactgccca gaagaaaatc caaggcttta
3841 gccaggagcg gaaactgact accatgtaat tatcaaagta aaattgg
//