LOCUS AK304410 2202 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ54580 complete cds, highly similar to Histone
deacetylase 9.
ACCESSION AK304410
VERSION AK304410.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2202)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2202
/clone="TRACH3035285"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000499034"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 209..1750
/codon_start=1
/note="highly similar to Histone deacetylase 9"
/protein_id="BAH14176.1"
/transl_table=1
/translation="MMMPVVDPVVREKQLQQELLLIQQQQQIQKQLLIAEFQKQHENL
TRQHQAQLQEHIKELLAIKQQQELLEKEQKLEQQRQEQEVERHRREQQLPPLRGKDRG
RERAVASTEVKQKLQEFLLSKSATKDTPTNGKNHSVSRHPKLWAAHHTSLDQSSPPLS
GTSPSYKYTLPGAQDAKDDFPLRKTESSVSSSSPGSGPSSPNNGPTGSVTENETSVLP
PTPHAEQMVSQQRILIHEDFMNLLSLYTSPSLPNITLGLPAVPSQLNASNSLKEKQKC
ETQTLRQGVPLPGQYGGSIPASSSHPHVTLEGKPPNSSHQALLQHLLLKEQMRQQKLL
VAGGVPLHPQSPLATKERISPGIRGTHKLPRHRPLNRTQSAPLPQSTLAQLVIQQQHQ
QFLEKQKQYQQQIHMNKLLSKSIEQLKQPGSHLEEAEEELQGDQAMQEDRAPSSGNST
RSDSSACVDDTLGQVGAVKVKEEPVDSDEDAQIQEMESGEQAAFMQQVIGKDLAPGFV
IKVII"
BASE COUNT 673 a 508 c 488 g 533 t
ORIGIN
1 ctttttatca atgggtaggt gggagaacca ggggaagact gtcagctacg attttctcta
61 gcctcaagaa gactgagacc gagccaaact cctggccaac gtgctttgtg gattcacagt
121 gtagcttgag aaaaatgtgg atgtgaagtc agaagttcct gtgggcctgg agcccatctc
181 acctttagac ctaaggacag acctcaggat gatgatgccc gtggtggacc ctgttgtccg
241 tgagaagcaa ttgcagcagg aattacttct tatccagcag cagcaacaaa tccagaagca
301 gcttctgata gcagagtttc agaaacagca tgagaacttg acacggcagc accaggctca
361 gcttcaggag catatcaagg aacttctagc cataaaacag caacaagaac tcctagaaaa
421 ggagcagaaa ctggagcagc agaggcaaga acaggaagta gagaggcatc gcagagaaca
481 gcagcttcct cctctcagag gcaaagatag aggacgagaa agggcagtgg caagtacaga
541 agtaaagcag aagcttcaag agttcctact gagtaaatca gcaacgaaag acactccaac
601 taatggaaaa aatcattccg tgagccgcca tcccaagctc tgggctgccc accacacatc
661 attggatcaa agctctccac cccttagtgg aacatctcca tcctacaagt acacattacc
721 aggagcacaa gatgcaaagg atgatttccc ccttcgaaaa actgaatcct cagtcagtag
781 cagttctcca ggctctggtc ccagttcacc aaacaatggg ccaactggaa gtgttactga
841 aaatgagact tcggttttgc cccctacccc tcatgccgag caaatggttt cacagcaacg
901 cattctaatt catgaagatt tcatgaacct gctaagtctt tatacctctc cttctttgcc
961 caacattacc ttggggcttc ccgcagtgcc atcccagctc aatgcttcga attcactcaa
1021 agaaaagcag aagtgtgaga cgcagacgct taggcaaggt gttcctctgc ctgggcagta
1081 tggaggcagc atcccggcat cttccagcca ccctcatgtt actttagagg gaaagccacc
1141 caacagcagc caccaggctc tcctgcagca tttattattg aaagaacaaa tgcgacagca
1201 aaagcttctt gtagctggtg gagttccctt acatcctcag tctcccttgg caacaaaaga
1261 gagaatttca cctggcatta gaggtaccca caaattgccc cgtcacagac ccctgaaccg
1321 aacccagtct gcacctttgc ctcagagcac gttggctcag ctggtcattc aacagcaaca
1381 ccagcaattc ttggagaagc agaagcaata ccagcagcag atccacatga acaaactgct
1441 ttcgaaatct attgaacaac tgaagcaacc aggcagtcac cttgaggaag cagaggaaga
1501 gcttcagggg gaccaggcga tgcaggaaga cagagcgccc tctagtggca acagcactag
1561 gagtgacagc agtgcttgtg tggatgacac actgggacaa gttggggctg tgaaggtcaa
1621 ggaggaacca gtggacagtg atgaagatgc tcagatccag gaaatggaat ctggggagca
1681 ggctgctttt atgcaacagg taataggcaa agatttagct ccaggatttg taattaaagt
1741 cattatctga acatgaaatg cattgcaggt ttggtaaatg gatatgattt cctatcagtt
1801 tatatttctc tatgatttga gttcagtgtt taaggattct acctaatgca gatatatgta
1861 tatatctata tagaggtctt tctatatact gatctctata tagatatcaa tgtttcattg
1921 aaaatccact ggtaaggaaa tacctgttat actaaaatta tgatacataa tatctgagca
1981 gttaataggc tttaaattta tcccaaagcc tgctacacca attacttcta aagaaaacaa
2041 attcactgtt attttgagtt tatgtgttga gatcagtgac tgctggatag tctcccagtc
2101 tgatcaatga agcattcgat tagtttttga ttttttgcaa catctagaat ttaattttca
2161 catcactgta cataatgtat catactatag tcttgaacac tg
//