LOCUS AK304338 2014 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58478 complete cds, highly similar to
Glypican-6 precursor.
ACCESSION AK304338
VERSION AK304338.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2014)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2014
/clone="TRACH3028085"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000498962"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 452..1738
/codon_start=1
/note="highly similar to Glypican-6 precursor"
/protein_id="BAG65183.1"
/transl_table=1
/translation="MPSWIGAVILPLLGLLLSLPAGADVKARSCGEVRQAYGAKGFSL
ADIPYQEIAGEHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRH
KKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEM
LNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKPFGDVPRKLKIQVTRAFIAA
RTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKG
CLANQADLDTEWNLFIDAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVS
AKVFQGCGQPKPAPALRSARSAPENFNTRFRPYNPEERPTTAAGTSLDRLVSIHRLIT
MADALFYQGHSLKLPGDSGKVCYKSHLMLISASVLN"
BASE COUNT 484 a 496 c 506 g 528 t
ORIGIN
1 actcgctctc gcttgtccat ctccctcccg ggggagccgg cgcgcgctcc cacctttgcc
61 gcacactccg gcgagccgag cccgcagcgc tccaggattc tgcggctcgg aactcggatt
121 gcagctctga acccccatgg tggtttttta aacacttctt ttccttctct tcctcgtttt
181 gattgcaccg tttccatctg ggggctagag gagcaaggca gcagccttcc cagccagccc
241 ttgttggctt gccatcgtcc atctggctta taaaagtttg ctgagcgcag tccagagggc
301 tgcgctgctc gtcccctcgg ctggcagaag ggggtgacgc tgggcagcgg cgaggagcgc
361 gccgctgcct ctggcgggct ttcggcttga ggggcaaggt gaagagcgca ccggccgtgg
421 ggtttaccga gctggatttg tatgttgcac catgccttct tggatcgggg ctgtgattct
481 tcccctcttg gggctgctgc tctccctccc cgccggggcg gatgtgaagg ctcggagctg
541 cggagaggtc cgccaggcgt acggtgccaa gggattcagc ctggcggaca tcccctacca
601 ggagatcgca ggggaacact taagaatctg tcctcaggaa tatacatgct gcaccacaga
661 aatggaagac aagttaagcc aacaaagcaa actcgaattt gaaaaccttg tggaagagac
721 aagccatttt gtgcgcacca cttttgtgtc caggcataag aaatttgacg aatttttccg
781 agagctcctg gagaatgcag aaaagtcact aaatgatatg tttgtacgga cctatggcat
841 gctgtacatg cagaattcag aagtcttcca ggacctcttc acagagctga aaaggtacta
901 cactgggggt aatgtgaatc tggaggaaat gctcaatgac ttttgggctc ggctcctgga
961 acggatgttt cagctgataa accctcagta tcacttcagt gaagactacc tggaatgtgt
1021 gagcaaatac actgaccagc tcaagccatt tggagacgtg ccccggaaac tgaagattca
1081 ggttacccgc gccttcattg ctgccaggac ctttgtccag gggctgactg tgggcagaga
1141 agttgcaaac cgagtttcca aggtcagccc aaccccaggg tgtatccgtg ccctcatgaa
1201 gatgctgtac tgcccatact gtcgggggct tcccactgtg aggccctgca acaactactg
1261 tctcaacgtc atgaagggct gcttggcaaa tcaggctgac ctcgacacag agtggaatct
1321 gtttatagat gcaatgctct tggtggcaga gcgactggag gggccattca acattgagtc
1381 ggtcatggac ccgatagatg tcaagatttc tgaagccatt atgaacatgc aagaaaacag
1441 catgcaggtg tctgcaaagg tctttcaggg atgtggtcag cccaaacctg ctccagccct
1501 cagatctgcc cgctcagctc ctgaaaattt taatacacgt ttcaggccct acaatcctga
1561 ggaaagacca acaactgctg caggcacaag cttggaccgg ctggtgagta ttcacagatt
1621 gataaccatg gcggatgctt tgttttacca aggtcattct ttgaaactcc caggagattc
1681 tggaaaagtt tgttataaga gtcatctcat gcttatatct gcctctgttc ttaattagaa
1741 tattgaaaag taatgggatc tttcttttgg gtcatgtatt ggattattta agaaatctat
1801 taatccatta agaaactatt aatgcatgta tgcagtgacc acattttcaa cttcttattt
1861 ctcatgaaat attaatttga aaactaagtt gccagttctt ccagagatat aattgcaata
1921 gcacatttct tactcatctg cttcagttct tttctgaaaa tggttatgta ttcaattatg
1981 atataatgca agtttattat gacttcttat ttgc
//