LOCUS AK304315 2821 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ55752 complete cds, highly similar to
Hypoxia-inducible factor 1 alpha.
ACCESSION AK304315
VERSION AK304315.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2821)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2821
/clone="TRACH3026526"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000498939"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 285..2594
/codon_start=1
/note="highly similar to Hypoxia-inducible factor 1 alpha"
/protein_id="BAG65167.1"
/transl_table=1
/translation="MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQL
PLPHDGDMIYISDNVNKYMGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGK
EQNTQRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPM
TCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSI
YEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQ
CIVCVNYVVSGIIQHDLIFSLQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLK
KEPDALTLLAPAAGDTIISLDFGSNDTETDDQQLEEVPLYNDVMLPSPNEKLQNINLA
MSPLPTAETPKPLRSSADPALNQEVALKLEPNPESLELSFTMPQIQDQTPSPSDGSTR
QSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLFAEDTEAKNPFSTQDTDLDLEMLAPY
IPMDDDFQLRSFDQLSPLESSSASPESASPQSTVTVFQQTQIQEPTANATTTTATTDE
LKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYRDTQSRTASPNRAGKGVIEQTE
KSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKRKMEHDGSLFQAVGIGTLLQ
QPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLACRLLGQSMDESGLPQLTS
YDCEVNAPIQGSRNLLQGEELLRALDQVN"
BASE COUNT 874 a 632 c 577 g 738 t
ORIGIN
1 gtgctgcctc gtctgagggg acaggaggat caccctcttc gtcgcttcgg ccagtgtgtc
61 gggctgggcc ctgacaagcc acctgaggag aggctcggag ccgggcccgg accccggcga
121 ttgccgcccg cttctctcta gtctcacgag gggtttcccg cctcgcaccc ccacctctgg
181 acttgccttt ccttctcttc tccgcgtgtg gagggagcca gcgcttaggc cggagcgagc
241 ctgggggccg cccgccgtga agacatcgcg gggaccgatt caccatggag ggcgccggcg
301 gcgcgaacga caagaaaaag ataagttctg aacgtcgaaa agaaaagtct cgagatgcag
361 ccagatctcg gcgaagtaaa gaatctgaag ttttttatga gcttgctcat cagttgccac
421 ttccacatga tggtgacatg atttacattt ctgataatgt gaacaaatac atgggattaa
481 ctcagtttga actaactgga cacagtgtgt ttgattttac tcatccatgt gaccatgagg
541 aaatgagaga aatgcttaca cacagaaatg gccttgtgaa aaagggtaaa gaacaaaaca
601 cacagcgaag cttttttctc agaatgaagt gtaccctaac tagccgagga agaactatga
661 acataaagtc tgcaacatgg aaggtattgc actgcacagg ccacattcac gtatatgata
721 ccaacagtaa ccaacctcag tgtgggtata agaaaccacc tatgacctgc ttggtgctga
781 tttgtgaacc cattcctcac ccatcaaata ttgaaattcc tttagatagc aagactttcc
841 tcagtcgaca cagcctggat atgaaatttt cttattgtga tgaaagaatt accgaattga
901 tgggatatga gccagaagaa cttttaggcc gctcaattta tgaatattat catgctttgg
961 actctgatca tctgaccaaa actcatcatg atatgtttac taaaggacaa gtcaccacag
1021 gacagtacag gatgcttgcc aaaagaggtg gatatgtctg ggttgaaact caagcaactg
1081 tcatatataa caccaagaat tctcaaccac agtgcattgt atgtgtgaat tacgttgtga
1141 gtggtattat tcagcacgac ttgattttct cccttcaaca aacagaatgt gtccttaaac
1201 cggttgaatc ttcagatatg aaaatgactc agctattcac caaagttgaa tcagaagata
1261 caagtagcct ctttgacaaa cttaagaagg aacctgatgc tttaactttg ctggccccag
1321 ccgctggaga cacaatcata tctttagatt ttggcagcaa cgacacagaa actgatgacc
1381 agcaacttga ggaagtacca ttatataatg atgtaatgct cccctcaccc aacgaaaaat
1441 tacagaatat aaatttggca atgtctccat tacccaccgc tgaaacgcca aagccacttc
1501 gaagtagtgc tgaccctgca ctcaatcaag aagttgcatt aaaattagaa ccaaatccag
1561 agtcactgga actttctttt accatgcccc agattcagga tcagacacct agtccttccg
1621 atggaagcac tagacaaagt tcacctgagc ctaatagtcc cagtgaatat tgtttttatg
1681 tggatagtga tatggtcaat gaattcaagt tggaattggt agaaaaactt tttgctgaag
1741 acacagaagc aaagaaccca ttttctactc aggacacaga tttagacttg gagatgttag
1801 ctccctatat cccaatggat gatgacttcc agttacgttc cttcgatcag ttgtcaccat
1861 tagaaagcag ttccgcaagc cctgaaagcg caagtcctca aagcacagtt acagtattcc
1921 agcagactca aatacaagaa cctactgcta atgccaccac taccactgcc accactgatg
1981 aattaaaaac agtgacaaaa gaccgtatgg aagacattaa aatattgatt gcatctccat
2041 ctcctaccca catacataaa gaaactacta gtgccacatc atcaccatat agagatactc
2101 aaagtcggac agcctcacca aacagagcag gaaaaggagt catagaacag acagaaaaat
2161 ctcatccaag aagccctaac gtgttatctg tcgctttgag tcaaagaact acagttcctg
2221 aggaagaact aaatccaaag atactagctt tgcagaatgc tcagagaaag cgaaaaatgg
2281 aacatgatgg ttcacttttt caagcagtag gaattggaac attattacag cagccagacg
2341 atcatgcagc tactacatca ctttcttgga aacgtgtaaa aggatgcaaa tctagtgaac
2401 agaatggaat ggagcaaaag acaattattt taataccctc tgatttagca tgtagactgc
2461 tggggcaatc aatggatgaa agtggattac cacagctgac cagttatgat tgtgaagtta
2521 atgctcctat acaaggcagc agaaacttac tgcagggtga agaattactc agagctttgg
2581 atcaagttaa ctgagctttt tcttaatttc attccttttt ttggacactg gtggctcact
2641 acctaaagca gtctatttat attttctaca tctaatttta gaagcctggc tacaatactg
2701 cacaaacttg gttagttcaa tttttgatcc cctttctact taatttacat taatgctctt
2761 ttttagtatg ttctttaatg ctggatcaca gacagctcat tttctcagtt ttttggtatt
2821 t
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