LOCUS AK304231 3307 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ59655 complete cds, highly similar to
Protocadherin-1 precursor.
ACCESSION AK304231
VERSION AK304231.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3307)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3307
/clone="TRACH3019753"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000498855"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 100..3216
/codon_start=1
/note="highly similar to Protocadherin-1 precursor"
/protein_id="BAG65100.1"
/transl_table=1
/translation="MEHLRHSPGPGGQRLLLPSMLLALLLLLAPSPGHATRVVYKVPE
EQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQ
NQLPGDPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTN
IGSLFPIPLASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHS
VIQVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFS
VLAKDRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAV
ALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDY
TIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVIAEITA
SDADSGSNAELVYSLEPEPAAKGLFTISPETGEIQVKTSLDREQRESYELKVVAADRG
SPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENAQ
VQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTIN
VLDENDSAPYITAPSNTSHKLLTPQTRLGETVSQVAAEDFDSGVNAELIYSIAGGNPY
GLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRT
LLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCR
QREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKS
LKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVV
QDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQVGQPFQLSTPQPLPHPYHG
AIWTEVWE"
BASE COUNT 744 a 993 c 939 g 631 t
ORIGIN
1 ctgagtttct ggaatcgggg ttctgtgctg ggactgactg ctcttgtgga gaatcgtgtg
61 tcagtgggag aggccctcct gattctgggg cctcccagga tggagcacct gaggcacagc
121 ccaggccctg gggggcaacg gctactgctg ccctccatgc tgctagcact gctgctcctg
181 ctggctccat ccccaggcca cgccactcgg gtagtgtaca aggtgccgga ggaacagcca
241 cccaacaccc tcattgggag cctcgcagcc gactatggtt ttccagatgt ggggcacctg
301 tacaagctag aggtgggtgc cccgtacctt cgcgtggatg gcaagacagg tgacattttc
361 accaccgaga cctccatcga ccgtgagggg ctccgtgaat gccagaacca gctccctggt
421 gatccctgca tcctggagtt tgaggtatct atcacagacc tcgtgcagaa tggcagcccc
481 cggctgctag agggccagat agaagtacaa gacatcaatg acaacacacc caacttcgcc
541 tcaccagtca tcactctggc catccctgag aacaccaaca tcggctcact cttccccatc
601 ccgctggctt cagaccgtga tgctggtccc aacggtgtgg catcctatga gctgcaggct
661 gggcctgagg cccaggagct atttgggctg caggtggcag aggaccagga ggagaagcaa
721 ccacagctca ttgtgatggg caacctggac cgtgagcgct gggactccta tgacctcacc
781 atcaaggtgc aggatggcgg cagcccccca cgcgccagca gtgccctgct gcgtgtcacc
841 gtgcttgaca ccaatgacaa cgcccccaag tttgagcggc cctcctatga ggccgaacta
901 tctgagaata gccccatagg ccactcggtc atccaggtga aggccaatga ctcagaccaa
961 ggtgccaatg cagaaatcga atacacattc caccaggcgc ccgaagttgt gaggcgtctt
1021 cttcgactgg acaggaacac tggacttatc actgttcagg gcccggtgga ccgtgaggac
1081 ctaagcaccc tgcgcttctc agtgcttgct aaggaccgag gcactaaccc caagagtgcc
1141 cgtgcccagg tggttgttac cgtgaaggac atgaatgaca atgcccccac cattgagatc
1201 cggggcatag ggctagtgac tcatcaagat gggatggcta acatctcaga ggatgtggca
1261 gaggagacag ctgtggccct ggtgcaggtg tctgaccgag atgagggaga gaatgcagct
1321 gtcacctgtg tggtggcagg tgatgtgccc ttccagctgc gccaggccag tgagacaggc
1381 agtgacagca agaagaagta tttcctgcag actaccaccc cgctagacta cgagaaggtc
1441 aaagactaca ccattgagat tgtggctgtg gactctggca accccccact ctccagcact
1501 aactccctca aggtgcaggt ggtggacgtc aatgacaacg cacctgtctt cactcagagt
1561 gtcactgagg tcgccttccc ggaaaacaac aagcctggtg aagtgattgc tgagatcact
1621 gccagtgatg ctgactctgg ctctaatgct gagctggttt actctctgga gcctgagccg
1681 gctgctaagg gcctcttcac catctcaccc gagactggag agatccaggt gaagacatct
1741 ctggatcggg aacagcggga gagctatgag ttgaaggtgg tggcagctga ccggggcagt
1801 cctagcctcc agggcacagc cactgtcctt gtcaatgtgc tggactgcaa tgacaatgac
1861 cccaaattta tgctgagtgg ctacaacttc tcagtgatgg agaacatgcc agcactgagt
1921 ccagtgggca tggtgactgt cattgatgga gacaaggggg agaatgccca ggtgcagctc
1981 tcagtggagc aggacaacgg tgactttgtt atccagaatg gcacaggcac catcctatcc
2041 agcctgagct ttgatcgaga gcaacaaagc acctacacct tccagctgaa ggcagtggat
2101 ggtggcgtcc cacctcgctc agcttacgtt ggtgtcacca tcaatgtgct ggacgagaat
2161 gacagcgcac cctatatcac tgccccttct aacacctctc acaagctgct gaccccccag
2221 acacgtcttg gtgagacggt cagccaggtg gcagccgagg actttgactc tggtgtcaat
2281 gctgagctga tctacagcat tgcaggtggc aacccttatg gactcttcca gattgggtca
2341 cattcaggtg ccatcaccct ggagaaggag attgagcggc gccaccatgg gctacaccgc
2401 ctggtggtga aggtcagtga ccgcggcaag cccccacgct atggcacagc cttggtccat
2461 ctttatgtca atgagactct ggccaaccgc acgctgctgg agaccctcct gggccacagc
2521 ctggacacgc cgctggatat tgacattgct ggggatccag aatatgagcg ctccaagcag
2581 cgtggcaaca ttctctttgg tgtggtggct ggtgtggtgg ccgtggcctt gctcatcgcc
2641 ctggcggttc ttgtgcgcta ctgcagacag cgggaggcca aaagtggtta ccaggctggt
2701 aagaaggaga ccaaggacct gtatgccccc aagcccagtg gcaaggcctc caagggaaac
2761 aaaagcaaag gcaagaagag caagtcccca aagcccgtga agccagtgga ggacgaggat
2821 gaggccgggc tgcagaagtc cctcaagttc aacctgatga gcgatgcccc tggggacagt
2881 ccccgcatcc acctgcccct caactaccca ccaggcagcc ctgacctggg ccgccactat
2941 cgctctaact ccccactgcc ttccatccag ctgcagcccc agtcaccctc agcctccaag
3001 aagcaccagg tggtacagga cctgccacct gcaaacacat tcgtgggcac cggggacacc
3061 acgtccacgg gctctgagca gtactccgac tacagctacc gcaccaaccc ccccaaatac
3121 cccagcaagc aggtaggcca gccctttcag ctcagcacac cccagcccct accccacccc
3181 taccacggag ccatctggac cgaggtgtgg gagtgatgga gcaggtttac tgtgcctgcc
3241 cgtgttgggg gccagcctga gccagcagtg ggaggtgggg ccttagtgcc tcacccggca
3301 cacggat
//