LOCUS AK304155 3478 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ52401 complete cds, highly similar to
Integrin alpha-10.
ACCESSION AK304155
VERSION AK304155.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3478)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3478
/clone="TRACH3012780"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000498779"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 108..3218
/codon_start=1
/note="highly similar to Integrin alpha-10"
/protein_id="BAG65044.1"
/transl_table=1
/translation="MNITHAYSQGHQKLNLDTVSYNMLGVDSDGCPTYMDVVIVLDGS
NSIYPWSEVQTFLRRLVGKLFIDPEQIQVGLVQYGESPVHEWSLGDFRTKEEVVRAAK
NLSRREGRETKTAQAIMVACTEGFSQSHGGRPEAARLLVVVTDGESHDGEELPAALKA
CEAGRVTRYGIAVLGHYLRRQRDPSSFLREIRTIASDPDERFFFNVTDEAALTDIVDA
LGDRIFGLEGSHAENESSFGLEMSQIGFSTHRLKDGILFGMVGAYDWGGSVLWLEGGH
RLFPPRMALEDEFPPALQNHAAYLGYSVSSMLLRGGRRLFLSGAPRFRHRGKVIAFQL
KKDGAVRVAQSLQGEQIGSYFGSELCPLDTDRDGTTDVLLVAAPMFLGPQNKETGRVY
VYLVGQQSLLTLQGTLQPEPPQDARFGFAMGALPDLNQDGFADVAVGAPLEDGHQGAL
YLYHGTQSGVRPHPAQRIAAASMPHALSYFGRSVDGRLDLDGDDLVDVAVGAQGAAIL
LSSRPIVHLTPSLEVTPQAISVVQRDCRRRGQEAVCLTAALCFQVTSRTPGRWDHQFY
MRFTASLDEWTAGARAAFDGSGQRLSPRRLRLSVGNVTCEQLHFHVLDTSDYLRPVAL
TVTFALDNTTKPGPVLNEGSPTSIQKLVPFSKDCGPDNECVTDLVLQVNMDIRGSRKA
PFVVRGGRRKVLVSTTLENRKENAYNTSLSLIFSRNLHLASLTPQRESPIKVECAAPS
AHARLCSVGHPVFQTGAKVTFLLEFEFSCSSLLSQVFVKLTASSDSLERNGTLQDNTA
QTSAYIQYEPHLLFSSESTLHRYEVHPYGTLPVGPGPEFKTTLRVQNLGCYVVSGLII
SALLPAVAHGGNYFLSLSQVITNNASCIVQNLTEPPGPPVHPEELQHTNRLNGSNTQC
QVVRCHLGQLAKGTEVSVGLLRLVHNEFFRRAKFKSLTVVSTFELGTEEGSVLQLTEA
SRWSESLLEVVQTRPILISLWILIGSVLGGLLLLAPLVFCLWKLGFFAHKKIPEEEKR
EEKLEQ"
BASE COUNT 779 a 929 c 957 g 813 t
ORIGIN
1 acttctcata ctggacagaa accgatcagg catggaactc cccttcgtca ctcacctgtt
61 cttgcccctg gtgttcctga caggtctctg ctcccccttt aacctggatg aacatcaccc
121 acgcctattc ccagggccac cagaagctga atttggatac agtgtcttac aacatgttgg
181 gggtggacag cgatggctgc ccaacataca tggatgttgt cattgtcttg gatggctcca
241 acagcatcta cccctggtct gaagttcaga ccttcctacg aagactggta gggaaactgt
301 ttattgaccc agaacagata caggtgggac tggtacagta tggggagagc cctgtacatg
361 agtggtccct gggagatttc cgaacgaagg aagaagtggt gagagcagca aagaacctca
421 gtcggcggga gggacgagaa acaaagactg cccaagcaat aatggtggcc tgcacagaag
481 ggttcagtca gtcccatggg ggccgacccg aggctgccag gctactggtg gttgtcactg
541 atggagagtc ccatgatgga gaggagcttc ctgcagcact aaaggcctgt gaggctggaa
601 gagtgacacg ctatgggatt gcagtccttg gtcactacct ccggcggcag cgagatccca
661 gctctttcct gagagaaatt agaactattg ccagtgatcc agatgagcga ttcttcttca
721 atgtcacaga tgaggctgct ctgactgaca ttgtggatgc actaggagat cggatttttg
781 gccttgaagg gtcccatgca gaaaacgaaa gctcctttgg gctggaaatg tctcagattg
841 gtttctccac tcatcggcta aaggatggga ttctttttgg gatggtgggg gcctatgact
901 ggggaggctc tgtgctatgg cttgaaggag gccaccgcct tttcccccca agaatggcac
961 tggaagacga gttcccccct gcactgcaga accatgcagc ctacctgggt tactctgttt
1021 cttccatgct tttgcggggt ggacgccgcc tgtttctctc tggggctcct cgatttagac
1081 atcgaggaaa agtcatcgcc ttccagctta agaaagatgg ggctgtgagg gttgcccaga
1141 gcctccaggg ggagcagatt ggttcatact ttggcagtga gctctgccca ttggatacag
1201 atagggatgg aacaactgat gtcttacttg tggctgcccc catgttcctg ggaccccaga
1261 acaaggaaac aggacgtgtt tatgtgtatc tggtaggcca gcagtccttg ctgaccctcc
1321 aaggaacact tcagccagaa cccccccagg atgctcggtt tggctttgcc atgggagctc
1381 ttcctgatct gaaccaagat ggttttgctg atgtggctgt gggggcgcct ctggaagatg
1441 ggcaccaggg agcactgtac ctgtaccatg gaacccagag tggagtcagg ccccatcctg
1501 cccagaggat tgctgctgcc tccatgccac atgccctcag ctactttggc cgaagtgtgg
1561 atggtcggct agatctggat ggagatgatc tggtcgatgt ggctgtgggt gcccaggggg
1621 cagccatcct gctcagctcc cggcccattg tccatctgac cccatcactg gaggtgaccc
1681 cacaggccat cagtgtggtt cagagggact gtaggcggcg aggccaagag gcagtctgtc
1741 tgactgcagc cctttgcttc caagtgacct cccgtactcc tggtcgctgg gatcaccaat
1801 tctacatgag gttcaccgca tcactggatg aatggactgc tggggcacgt gcagcatttg
1861 atggctctgg ccagaggttg tcccctcgga ggctccggct cagtgtgggg aatgtcactt
1921 gtgagcagct acacttccat gtgctggata catcagatta cctccggcca gtggccttga
1981 ctgtgacctt tgccttggac aatactacaa agccagggcc tgtgctgaat gagggctcac
2041 ccacctctat acaaaagctg gtccccttct caaaggattg tggccctgac aatgaatgtg
2101 tcacagacct ggtgcttcaa gtgaatatgg acatcagagg ctccaggaag gccccatttg
2161 tggttcgagg tggccggcgg aaagtgctgg tatctacaac tctggagaac agaaaggaaa
2221 atgcttacaa tacgagcctg agtctcatct tctctagaaa cctccacctg gccagtctca
2281 ctcctcagag agagagccca ataaaggtgg aatgtgccgc cccttctgct catgcccggc
2341 tctgcagtgt ggggcatcct gtcttccaga ctggagccaa ggtgaccttt ctgctagagt
2401 ttgagtttag ctgctcctct ctcctgagcc aggtcttcgt gaagctgact gccagcagtg
2461 acagcctgga gagaaatggg acccttcaag ataacacagc ccagacctca gcctacatcc
2521 aatatgagcc ccacctcctg ttctctagtg agtctaccct gcaccgctat gaggttcacc
2581 catatgggac cctcccagtg ggtcctggcc cagaattcaa aaccactctc agggttcaga
2641 acctaggctg ctatgtggtc agtggcctca tcatctcagc cctccttcca gctgtggccc
2701 atgggggcaa ttacttccta tcactgtctc aagtcatcac taacaatgca agctgcatag
2761 tgcagaacct gactgaaccc ccaggcccac ctgtgcatcc agaggagctt caacacacaa
2821 acagactgaa tgggagcaat actcagtgtc aggtggtgag gtgccacctt gggcagctgg
2881 caaaggggac tgaggtctct gttggactat tgaggctggt tcacaatgaa tttttccgaa
2941 gagccaagtt caagtccctg acggtggtca gcacctttga gctgggaacc gaagagggca
3001 gtgtcctaca gctgactgaa gcctcccgtt ggagtgagag cctcttggag gtggttcaga
3061 cccggcctat cctcatctcc ctgtggatcc tcataggcag tgtcctggga gggttgctcc
3121 tgcttgctcc ccttgtcttc tgcctgtgga agcttggctt ctttgcccat aagaaaatcc
3181 ctgaggaaga aaaaagagaa gagaagttgg agcaatgaat gtagaataag ggtctagaaa
3241 gtcctccctg gcagcttctt caagagactt gcataaaagc agaggtttgg gggctcagat
3301 gggacaagaa gccgcctctg gactatctcc ccagaccagc agcctgactt gacttttgag
3361 tcctagggat gctgctggct agagatgagg cttacctcag acaagaagag ctggcaccaa
3421 aactagccat gctcccaccc tctgcttccc tcctcctcgt gatcctggtt ccatagcc
//