LOCUS AK304027 2908 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ61048 complete cds, highly similar to
Jumonji/ARID domain-containing protein 1D.
ACCESSION AK304027
VERSION AK304027.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2908)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2908
/clone="TRACH3002440"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000498651"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 76..2742
/codon_start=1
/note="highly similar to Jumonji/ARID domain-containing
protein 1D"
/protein_id="BAG64942.1"
/transl_table=1
/translation="MEPGCDEFLPPPECPVFEPSWAEFQDPLGYIAKIRPIAEKSGIC
KIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKI
PNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGSLLRSHYERI
IYPYEMFQSGANHVQCNTHPFDNEVKDKEYKPHSIPLRQSVQPSKFSSYSRRAKRLQP
DPEPTEEDIEKHPELKKLQIYGPGPKMMGLGLMAKDKDKTVHKKVTCPPTVTVKDEQS
GGGNVSSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLLFCDG
CDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMAD
SFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQ
NLSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDH
WSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMNPNTL
MSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYR
RLRRYCVFSHEELICKMAAFPETLDLNLAVAVHKEMFIMVQEERRLRKALLEKGVTEA
EREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYR
YTLDELPTMLHKLKIRAESFDTWANKVRVALEVEDGRKRSFEELRALESEARERRFPN
SELLQRLKNCLSEVEACIAQVLGLVSGQVARMDTPQLTLTELRVLLEQMGSLPCAMHQ
IGDVKVLSWKWRRYVFPYHLCVYSMQGNILPD"
BASE COUNT 744 a 677 c 766 g 721 t
ORIGIN
1 tctgcagggc ccggaggtca agatggtggc tgtaaaacta ggatccctga cgattgctta
61 gcattaaggc ccgacatgga accggggtgt gacgagttcc tgccgccacc ggagtgcccg
121 gtttttgagc ctagctgggc tgaattccaa gacccgcttg gctacattgc gaaaataagg
181 cccatagcag agaagtctgg catctgcaaa atccgcccac ccgcggattg gcagcctcct
241 tttgcagtag aagttgacaa tttcagattt actcctcgcg tccaaaggct aaatgaactg
301 gaggcccaaa ctagagtgaa attgaactat ttggatcaga ttgcaaaatt ctgggaaatt
361 caaggctcct ctttaaagat tcccaatgtg gagcggaaga tcttggacct ctacagcctt
421 agtaagattg tgattgagga aggtggctat gaagccatct gcaaggatcg tcggtgggct
481 cgagttgccc agcgtctcca ctacccacca ggcaaaaaca ttggctccct gctacgatca
541 cattacgaac gcattattta cccctatgaa atgtttcagt ctggagccaa ccatgtgcaa
601 tgtaacacac acccgtttga caatgaggta aaagataagg aatacaagcc ccacagcatc
661 ccccttagac agtctgtgca gccttcaaag ttcagcagct acagtcgacg ggcaaaaagg
721 ctacagcctg atccagagcc tacagaggag gacattgaga agcatccaga gctaaagaag
781 ttacagatat atgggccagg tcccaaaatg atgggcttgg gccttatggc taaggataag
841 gataagactg tgcataagaa agtcacatgc cccccaactg ttacggtgaa ggatgagcaa
901 agtggaggtg ggaacgtgtc atcaacattg ctcaagcagc acttgagcct agagccctgc
961 actaagacaa ccatgcaact tcgaaagaat cacagcagtg cccagtttat tgactcatat
1021 atttgccaag tatgctcccg tggggatgaa gatgataagc ttcttttctg tgatggctgt
1081 gatgacaatt accacatctt ctgcttgtta ccaccccttc ctgaaatccc cagaggcatc
1141 tggaggtgcc caaaatgtat cttggcggag tgtaaacagc ctcctgaagc ttttggattt
1201 gaacaggcta cccaggagta cagtttgcag agttttggtg aaatggctga ttccttcaag
1261 tccgactact tcaacatgcc tgtacatatg gtgcctacag aacttgtaga gaaggaattc
1321 tggaggctgg tgagcagcat tgaggaagac gtgacagttg aatatggagc tgatattcat
1381 tccaaagaat ttggcagtgg ctttcctgtc agcaatagca aacaaaactt atctcctgag
1441 gagaaggagt atgcgaccag tggttggaac ctgaatgtga tgccagtgct agatcagtct
1501 gttctctgtc acatcaatgc agacatctca ggcatgaagg tgccctggct gtacgtgggc
1561 atggttttct cagcattttg ttggcatatt gaggatcact ggagttactc tattaactat
1621 ctgcattggg gtgagccgaa gacctggtat ggtgtaccct ccctggcagc agagcatttg
1681 gaggaggtga tgaagatgct gacacctgag ctgtttgata gccagcctga tctcctacac
1741 cagcttgtca ctctcatgaa tcccaacact ttgatgtccc atggtgtgcc agttgtccgc
1801 acaaaccagt gtgcagggga gtttgtcatc acttttcctc gtgcttacca cagtggtttt
1861 aaccaaggct acaattttgc tgaagctgtc aacttttgta ctgctgactg gctacctgct
1921 ggacgccagt gcattgaaca ctaccgccgg ctccggcgct attgtgtctt ctcccacgag
1981 gagctcatct gcaagatggc tgccttccca gagacgttgg atctcaatct agcagtagct
2041 gtgcacaagg agatgttcat tatggttcag gaggagcgac gtctacgaaa ggcccttttg
2101 gagaagggcg tcacggaggc tgagcgagag gcttttgagc tgctcccaga tgatgaacgc
2161 cagtgcatca agtgcaagac cacgtgcttc ttgtcagccc tggcctgcta cgactgccca
2221 gatggccttg tatgcctttc ccacatcaat gacctctgca agtgctctag tagccgacag
2281 tacctccggt atcggtacac cttggatgag ctccccacca tgctgcataa actgaagatt
2341 cgggctgagt cttttgacac ctgggccaac aaagtgcgag tggccttgga ggtggaggat
2401 ggccgtaaac gcagctttga agagctaagg gcactggagt ctgaggctcg tgagaggagg
2461 tttcctaata gtgagctgct tcagcgactg aagaactgcc tgagtgaggt ggaggcttgt
2521 attgctcaag tcctggggct ggtcagtggt caggtggcca ggatggacac tccacagctg
2581 accttgactg aactccgggt ccttcttgag cagatgggca gcctgccctg tgccatgcat
2641 cagattgggg atgtcaaggt tctttcctgg aagtggcgga gatatgtgtt cccataccat
2701 ctctgtgtgt acagcatgca aggaaatatc cttccagact gaaataatta aaaactctaa
2761 actgggccta cataagacac tggctcttgg gaatggggtg gagaggactg attggttggt
2821 tggttgattt ccctccagac accagagtct tagaaagctt actagatgga taagattgta
2881 ttaaagtggg tttggaaaaa gaaattta
//