LOCUS AK303970 2589 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ55909 complete cds, highly similar to
Transcription factor SOX-5.
ACCESSION AK303970
VERSION AK303970.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2589)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2589
/clone="TRACH2021304"
/clone_lib="TRACH2"
/db_xref="H-InvDB:HIT000498594"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 157..2418
/codon_start=1
/note="highly similar to Transcription factor SOX-5"
/protein_id="BAH14086.1"
/transl_table=1
/translation="MSVMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPL
HVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQK
AEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLS
KDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAA
SQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLLPLMIPVFPPD
QRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAA
QLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPK
TSDGKSPTSPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAI
QEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKF
SHAMMDFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQ
AFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCL
VDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLP
SEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDY
GSDSENHIAGQAN"
BASE COUNT 759 a 644 c 655 g 531 t
ORIGIN
1 agtaggagtg gagagcgtgc gtgagtgagt gtgtgtgtgt gtgtgtgtgt gtgtgcatgc
61 gtgtgtgaag aatgcacact atctcctgtt ggtaagtgtg tgcttactcc ctgaccagat
121 gctgcggtgc acggggcagc caccatctct gcatgcatgt ctgtgatgtc ttccaagcga
181 ccagcctctc cgtatgggga agcagatgga gaggtagcca tggtgacaag cagacagaaa
241 gtggaagaag aggagagtga cgggctccca gcctttcacc ttcccttgca tgtgagtttt
301 cccaacaagc ctcactctga ggaatttcag ccagtttctc tgctgacgca agagacttgt
361 ggccatagga ctcccacttc tcagcacaat acaatggaag ttgatggcaa taaagttatg
421 tcttcatttg ccccacacaa ctcatctacc tcacctcaga aggcagaaga aggtgggcga
481 cagagtggcg agtccttgtc tagtacagcc ctgggaactc ctgaacggcg caagggcagt
541 ttagctgatg ttgttgacac cttgaagcag aggaaaatgg aagagctcat taaaaacgag
601 ccggaagaaa cccccagtat tgaaaaacta ctctcaaagg actggaaaga caagcttctt
661 gcaatgggat cggggaactt tggcgaaata aaagggactc ccgagagctt agctgagaaa
721 gaaaggcaac tcatgggtat gatcaaccag ctgaccagcc tccgagagca gctgttggct
781 gcccacgatg agcagaagaa actagctgcc tctcagattg agaaacagcg tcagcaaatg
841 gagctggcca agcagcaaca agaacaaatt gcaagacagc agcagcagct tctacagcaa
901 caacacaaaa tcaatttgct ccagcaacag atccaggttc aaggtcagct gctgccatta
961 atgattcccg tattccctcc tgatcaacgg acactggctg cagctgccca gcaaggattc
1021 ctcctccctc caggcttcag ctataaggct ggatgtagtg acccttaccc tgttcagctg
1081 atcccaacta ccatggcagc tgctgccgca gcaacaccag gcttaggccc actccaactg
1141 cagcagttat atgctgccca gctagctgca atgcaggtat ctccaggagg gaagctgcca
1201 ggcatacccc aaggcaacct tggtgctgct gtatctccta ccagcattca cacagacaag
1261 agcacaaaca gcccaccacc caaaagcaag gatgaagtgg cacagccact gaacctatca
1321 gctaaaccca agacctctga tggcaaatca cccacatcac ccacctctcc ccatatgcca
1381 gctctgagaa taaacagtgg ggcaggcccc ctcaaagcct ctgtcccagc agcgttagct
1441 agtccttcag ccagagttag cacaataggt tacttaaatg accatgatgc tgtcaccaag
1501 gcaatccaag aagctcggca aatgaaggag caactccgac gggaacaaca ggtgcttgat
1561 gggaaggtgg ctgttgtgaa tagtctgggt ctcaataact gccgaacaga aaaggaaaaa
1621 acaacactgg agagtctgac tcagcaactg gcagttaaac agaatgaaga aggaaaattt
1681 agccatgcaa tgatggattt caatctgagt ggagattctg atggaagtgc tggagtctca
1741 gagtcaagaa tttataggga atcccgaggg cgtggtagca atgaacccca cataaagcgt
1801 ccaatgaatg ccttcatggt gtgggctaaa gatgaacgga gaaagatcct tcaagccttt
1861 cctgacatgc acaactccaa catcagcaag atattgggat ctcgctggaa agctatgaca
1921 aacctagaga aacagccata ttatgaggag caagcccgtc tcagcaagca gcacctggag
1981 aagtaccctg actataagta caagcccagg ccaaagcgca cctgcctggt ggatggcaaa
2041 aagctgcgca ttggtgaata caaggcaatc atgcgcaaca ggcggcagga aatgcggcag
2101 tacttcaatg ttgggcaaca agcacagatc cccattgcca ctgctggtgt tgtgtaccct
2161 ggagccatcg ccatggctgg gatgccctcc cctcacctgc cctcggagca ctcaagcgtg
2221 tctagcagcc cagagcctgg gatgcctgtt atccagagca cttacggtgt gaaaggagag
2281 gagccacata tcaaagaaga gatacaggcc gaggacatca atggagaaat ttatgatgag
2341 tacgacgagg aagaggatga tccagatgta gattatggga gtgacagtga aaaccatatt
2401 gcaggacaag ccaactgata agggtcaaaa gattgttgtg accttaggac ttaaagaagc
2461 cctaactggt tcatccttac cagtggccaa gcacattaac tttctcatac actgactgtt
2521 actttaactg ttagtcttaa atagttggga catcagctga ctaatagacc tcagcctcaa
2581 aaggcttgg
//