LOCUS AK303663 2444 bp mRNA linear HUM 31-JUL-2008
DEFINITION Homo sapiens cDNA FLJ55548 complete cds, highly similar to U5
small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.1.-).
ACCESSION AK303663
VERSION AK303663.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2444)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2444
/clone="THYMU3047422"
/clone_lib="THYMU3"
/db_xref="H-InvDB:HIT000498287"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thymus"
CDS 76..2232
/codon_start=1
/note="highly similar to U5 small nuclear
ribonucleoprotein 200 kDa helicase (EC 3.6.1.-)"
/protein_id="BAG64662.1"
/transl_table=1
/translation="MLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTG
ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCRATSTFNFHPNVR
PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDIL
TTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQL
FSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR
PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVKTIENKQDAV
DYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDV
APLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLL
RQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQAC
VDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFD
IMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD"
BASE COUNT 576 a 671 c 659 g 538 t
ORIGIN
1 agtgacgaca acgtgtttgt gggggccccc acgggcagcg ggaagactat ttgtgcagag
61 tttgccatcc tgcgaatgct gctgcagagc tcggaggggc gctgtgtgta catcaccccc
121 atggaggccc tggcagagca ggtatacatg gactggtacg agaagttcca ggacaggctc
181 aacaagaagg tggtactcct gacaggcgag aatgggcctg tcttagaagt gatctgctcc
241 cgaatgcgct acatctcctc ccagattgag cggcccattc gcattgtggc actcagctct
301 tcgctctcca atgccaagga tgtggcccac tggctgggct gcagagccac ctccaccttc
361 aacttccatc ccaatgtgcg tcccgtcccc ttggagctgc acatccaggg cttcaacatc
421 agccatacac aaacccgcct gctctccatg gccaagcctg tgtaccatgc tatcaccaag
481 cactcgccca agaagcctgt cattgtcttt gtgccgtctc gcaagcagac ccgcctcact
541 gccattgaca tcctcaccac ctgtgcagca gacatccaac ggcagaggtt cttgcactgc
601 accgagaagg atctgattcc gtacctggag aagctaagtg acagcacgct caaggaaacg
661 ctgctaaatg gggtgggcta cctgcatgag gggctcagcc ccatggagcg acgcctggtg
721 gagcagctct tcagctcagg ggctatccag gtggtggtgg cttctcggag tctctgctgg
781 ggcatgaacg tggctgccca cctggtaatc atcatggata cccagtacta caatggcaag
841 atccacgcct atgtggatta ccccatctat gacgtgcttc agatggtggg ccacgccaac
901 cgccctttgc aggacgatga ggggcgctgt gtcatcatgt gtcagggctc caagaaggat
961 ttcttcaaga agttcttata tgagccattg ccagtagaat ctcacctgga ccactgtatg
1021 catgaccact tcaatgctga gatcgtcaag accattgaga acaagcagga tgctgtggac
1081 tacctcacct ggacctttct gtaccgccgc atgacacaga accccaatta ctacaacttg
1141 cagggcatct cccatcgtca cttgtcggac cacttgtcag agctggtgga gcagaccctg
1201 agtgacctgg agcagtccaa gtgcatcagc atcgaggacg agatggacgt ggcgcctctg
1261 aacctaggca tgatcgccgc ctactattac atcaactaca ccaccattga gctcttcagc
1321 atgtccctca atgccaagac caaggtgcga gggcttatcg agatcatctc caatgcagca
1381 gagtatgaga acattcccat ccggcaccat gaagacaatc tcctgaggca gttggctcag
1441 aaggtccccc acaagctgaa taaccctaag ttcaatgatc cgcacgtcaa gaccaacctg
1501 ctcctgcagg ctcacttgtc tcgcatgcag ctgagtgctg agttgcagtc agatacggag
1561 gaaatcctta gtaaggcaat ccggctcatc caggcctgcg tggatgtcct ttccagcaat
1621 gggtggctca gccctgctct ggcagctatg gaactggccc agatggtcac ccaagccatg
1681 tggtccaagg actcatacct gaagcagctg ccacacttca cctctgagca tatcaaacgt
1741 tgcacagaca agggagtgga gagtgttttc gacatcatgg agatggagga tgaagaacgg
1801 aacgcgttgc ttcagctgac tgacagccag attgcagatg tggctcgctt ttgtaaccgc
1861 taccctaata tcgaactatc ttatgaggtg gtagataagg acagcatccg cagtggcggg
1921 ccagttgtgg tgctggtgca gctggagcga gaggaggaag tcacaggccc tgtcattgcg
1981 cctctcttcc cgcagaaacg tgaagagggc tggtgggtgg tgattggaga tgccaagtcc
2041 aatagcctca tctccatcaa gaggctgacc ttgcagcaga aggccaaggt gaagttggac
2101 tttgtggccc cagccactgg tgcccacaac tacactctgt acttcatgag tgacgcttac
2161 atgggatgtg accaggagta caaattcagc gtggatgtga aagaagctga gacagacagt
2221 gattcagatt gagtcctgag gcatttactt ttgggtaaag gagagttgag cctgaattag
2281 gaatgtgtac attgtaggaa tcctggttgt ggggaccagg tctgtgggcc tcaggtctgg
2341 ccagccaggg ctggtgctgt ccccgcctac ctccacttcc tttcccttgc tcactctgga
2401 tccagtgaca gcaggtgtca tgggtcaagc ataaatcata tata
//