LOCUS AK303519 2724 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ54527 complete cds, highly similar to Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane, transcript variant 1, mRNA. ACCESSION AK303519 VERSION AK303519.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2724) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..2724 /clone="THYMU3030683" /clone_lib="THYMU3" /db_xref="H-InvDB:HIT000498143" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="thymus" CDS 257..2431 /codon_start=1 /note="highly similar to Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane, transcript variant 1, mRNA" /protein_id="BAG64547.1" /transl_table=1 /translation="MAGRKHFWQPRWCPRWLEPPLLTGARESCGVQHRDGISRPWGPV KASIQECILPDSPLYHNKVQFTPTGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLH VRTSDCAYFILVDRYLSWFLPTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHT SLLKRHISHQTSVNADPASHEIWRSETLLQVFVEMWLHHYSLEMYQKMQSPHAKESFT PTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYL FLQHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQEN LLMYTKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELV IPHRQHRLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKYTPMFGPEARTL VLRLAQLITQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMGQDS VRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPDCIVGEDGLILT PLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALC SRDDFLGSFCRYHLTEPGLASRHLLSPVGRRQVAGHTRGPGLSLRFLGSYRTLVSLLL AFFVASLFCVGPLPCTLLLTLGYVLYASAMTLLTERGKLHQP" BASE COUNT 541 a 889 c 734 g 560 t ORIGIN 1 ttttcggcgc cgtggcggaa tggcggcttc catctctgag gcgagcgacg ctatggatcc 61 cacagtggtt tgctaagaag gccattttca actctccact ggaggctgct atggcgttcc 121 ctcacctgca gcagcccagc tttctactgg ctagcctgaa agctgactct ataaataagc 181 cctttgcaca gcagtgccaa gacttggtta aagtcattga ggactttcca gcaaaggagc 241 tgcacaccat cttcccatgg ctggtagaaa gcatttttgg cagcctagat ggtgtcctcg 301 ttggctggaa cctccgctgc ttacaggggc gcgtgaatcc tgtggagtac agcatcgtga 361 tggaatttct cgaccctggg gtcctgtgaa ggcgtccatc caggagtgca tcctccctga 421 cagtcctctg taccacaaca aggtccagtt cacccctact gggggccttg gtctgaactt 481 ggccctgaat ccgttcgagt attacatatt cttctttgcc ttgagcctca tcactcagaa 541 accacttcct gtgtccctcc acgtccgtac ttcagactgt gcctatttca tcctggtgga 601 caggtacctg tcatggttcc tgcccaccga aggcagtgtg cccccaccac tctcctccag 661 cccagggggg accagcccct caccacctcc caggacacca gccataccct ttgcttccta 721 tggcctccac cacactagcc tcctaaagcg acacatctct catcagacat ctgtgaatgc 781 agaccccgcc tcccacgaga tctggaggtc agaaactctg ctccaggttt ttgttgaaat 841 gtggcttcat cactattcct tggagatgta tcaaaaaatg cagtcccctc atgccaagga 901 gtcgttcacg cctactgagg agcatgtgtt ggtggtgcgc ctgctgctga agcacctgca 961 cgcctttgcc aacagcctga agccagagca ggcctcaccc tccgcccact cccacgccac 1021 cagccccctg gaggagttca aacgggctgc tgtcccgagg ttcgtccagc agaaactcta 1081 cctcttcttg cagcattgct ttggccactg gcccctggac gcatcgttca gagctgtcct 1141 ggagatgtgg ctgagctacc tgcagccgtg gcggtacgcg cctgacaagc aggctccggg 1201 cagcgactcc cagccccggt gtgtgtcgga gaaatgggca ccctttgtcc aggagaacct 1261 gctgatgtac accaagttgt ttgtgggctt tctgaaccgc gcgctccgca cagacctggt 1321 cagccccaag cacgcgctca tggtgttccg agtggccaaa gtctttgccc agcccaacct 1381 ggctgagatg attcagaaag gtgagcagct attcctggag ccagagctgg tcatccccca 1441 ccgccagcac cgactcttca cggcccccac attcactggg agcttcctgt caccctggcc 1501 accagcggtc actgatgcct ccttcaaggt gaagagccac gtctacagcc tggagggcca 1561 ggactgcaag tacaccccga tgtttgggcc cgaggcccgc accctggtcc tgcgcctcgc 1621 tcagctcatc acacaggcca aacacacagc caagtccatc tccgaccagt gtgcggagag 1681 cccggctggc cactccttcc tctcatggct gggctttagc tccatggaca ccaatggctc 1741 ctacacagcc aacgacctgg acgagatggg gcaagacagt gtccggaaga cagatgaata 1801 cctggagaag gccctggagt acctgcgcca gatattccgg ctcagcgaag cgcagctcag 1861 gcagttcaca ctcgccttgg gcaccaccca ggatgagaat ggaaaaaagc aactccccga 1921 ctgcatcgtg ggtgaggacg gactcatcct tacgcccctg gggcggtacc agatcatcaa 1981 tgggctgcga aggtttgaaa ttgagtacca gggggacccg gagctgcagc ccatccggag 2041 ctatgagatc gccagcttgg tccgcacact ctttaggctg tcgtctgcca tcaaccacag 2101 atttgcagga cagatggcgg ctctgtgttc ccgggatgac ttcctcggca gcttctgtcg 2161 ctaccacctc acagaacctg ggctggccag caggcacctg ctgagccctg tggggcggag 2221 gcaggtggcc ggccacaccc gcggccccgg gctcagcctg cgcttcctgg gcagttaccg 2281 gacgctggtc tcgctgctgc tggccttctt cgtggcctct ctgttctgcg tcgggcccct 2341 cccatgcacg ctgctgctca ccctgggcta tgtcctctac gcctctgcca tgacactgct 2401 gaccgagcgg gggaagctgc accagccctg aaggtgtcag ctgccttcag agcaggctgg 2461 agggatttgc cacacagccc cacccttggg ctgagaggac ctgggaagcc cctccaggag 2521 ggaacacggt catcctcggg cttctggagc ggggttcctg cagccgcaga ggcatctgga 2581 ggaaacgcaa ccaagaaagg aaggcaggtg ggccccagca aaggagtagc tgccagggct 2641 caacagctac gctctgtgac agcgcagagc tcagcgccgg cctttccctc cctccgccaa 2701 ggactcacgg ccaagccagc tctc //