LOCUS AK303467 2775 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ59806 complete cds, highly similar to Histone
deacetylase 4.
ACCESSION AK303467
VERSION AK303467.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2775)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2775
/clone="THYMU3025618"
/clone_lib="THYMU3"
/db_xref="H-InvDB:HIT000498091"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thymus"
CDS 78..2291
/codon_start=1
/note="highly similar to Histone deacetylase 4"
/protein_id="BAH13968.1"
/transl_table=1
/translation="MDVATALPLQVAPSAVPMDLRLDHQFSLPVAEPALREQQLQQEL
LALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRK
LERHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNL
NHCISSDPRYWYGKTQHSSLDQSSPPQSGVSTSYNHPVLGMYDAKDDFPLRKTASEPN
LKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSGPSSPNNSS
GSVSAENGIAPAVPSIPAETSLAHRLVAREGSAAPLPLYTSPSLPNITLGLPATGPSA
GTAGQQDAERLTLPALQQRLSLFPGTHLTPYLSTSPLERDGGAAHSPLLQHMVLLEQP
PAQAPLVTDWYLSGLGALPLHAQSLVGADRVSPSIHKLRQHRPLGRTQSAPLPQNAQA
LQHLVIQQQHQQFLEKHKQQFQQQQLQMNKIIPKPSEPARQPESHPEETEEELREHQA
LLDEPYLDRLPGQKEAHAQAGVQVKQEPIESDEEEAEPPREVEPGQRQPSEQELLFRQ
QALLLEQQRIHQLRNYQASMEAAGIPVSFGGHRPLSRAQSSPASATFPVSVQEPPTKP
RFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRPQETGLRGKCECIRGRKATL
EELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVSVPLMCK"
BASE COUNT 593 a 890 c 832 g 460 t
ORIGIN
1 agttttcggc agagtcgcgt gtctgagaag tgacgctggg atgtccctgg gctgtgccag
61 gagcagtgct ggctcagatg gatgtggcca cggcgctgcc tctgcaagtg gccccctcgg
121 cagtgcccat ggacctgcgc ctggaccacc agttctcact gcctgtggca gagccggccc
181 tgcgggagca gcagctgcag caggagctcc tggcgctcaa gcagaagcag cagatccaga
241 ggcagatcct catcgctgag ttccagaggc agcacgagca gctctcccgg cagcacgagg
301 cgcagctcca cgagcacatc aagcaacaac aggagatgct ggccatgaag caccagcagg
361 agctgctgga acaccagcgg aagctggaga ggcaccgcca ggagcaggag ctggagaagc
421 agcaccggga gcagaagctg cagcagctca agaacaagga gaagggcaaa gagagtgccg
481 tggccagcac agaagtgaag atgaagttac aagaatttgt cctcaataaa aagaaggcgc
541 tggcccaccg gaatctgaac cactgcattt ccagcgaccc tcgctactgg tacgggaaaa
601 cgcagcacag ttcccttgac cagagttctc caccccagag cggagtgtcg acctcctata
661 accacccggt cctgggaatg tacgacgcca aagatgactt ccctcttagg aaaacagctt
721 ctgaaccgaa tctgaaatta cggtccaggc taaagcagaa agtggccgaa agacggagca
781 gccccctgtt acgcaggaaa gacgggccag tggtcactgc tctaaaaaag cgtccgttgg
841 atgtcacaga ctccgcgtgc agcagcgccc caggctccgg acccagctca cccaacaaca
901 gctccgggag cgtcagcgcg gagaacggta tcgcgcccgc cgtccccagc atcccggcgg
961 agacgagttt ggcgcacaga cttgtggcac gagaaggctc ggccgctcca cttcccctct
1021 acacatcgcc atccttgccc aacatcacgc tgggcctgcc tgccaccggc ccctctgcgg
1081 gcacggcggg ccagcaggac gccgagagac tcacccttcc cgccctccag cagaggctct
1141 cccttttccc cggcacccac ctcactccct acctgagcac ctcgcccttg gagcgggacg
1201 gaggggcagc gcacagccct cttctgcagc acatggtctt actggagcag ccgccggcac
1261 aagcacccct cgtcacagac tggtatcttt caggcctggg agcactgccc ctccacgcac
1321 agtccttggt tggtgcagac cgggtgtccc cctccatcca caagctgcgg cagcaccgcc
1381 cactggggcg gacccagtcg gccccgctgc cccagaacgc ccaggctctg cagcacctgg
1441 tcatccagca gcagcatcag cagtttctgg agaaacacaa gcagcagttc cagcagcagc
1501 aactgcagat gaacaagatc atccccaagc caagcgagcc agcccggcag ccggagagcc
1561 acccagagga gacggaggag gagctccgtg agcaccaggc tctgctggac gagccctacc
1621 tggaccggct gccggggcag aaggaggcgc acgcacaggc cggcgtgcag gtgaagcagg
1681 agcccattga gagcgatgag gaagaggcag agcccccacg ggaggtggag ccgggccagc
1741 gccagcccag tgagcaggag ctgctcttca gacagcaagc cctcctgctg gagcagcagc
1801 ggatccacca gctgaggaac taccaggcgt ccatggaggc cgccggcatc cccgtgtcct
1861 tcggcggcca caggcctctg tcccgggcgc agtcctcacc cgcgtctgcc accttccccg
1921 tgtctgtgca ggagcccccc accaagccga ggttcacgac aggcctcgtg tatgacacgc
1981 tgatgctgaa gcaccagtgc acctgcggga gtagcagcag ccaccccgag cacgccggga
2041 ggatccagag catctggtcc cgcccgcagg agacgggcct ccggggcaaa tgcgagtgca
2101 tccgcggacg caaggccacc ctggaggagc tacagacggt gcactcggaa gcccacaccc
2161 tcctgtatgg cacgaacccc ctcaaccggc agaaactgga cagtaagaaa cttctaggct
2221 cgctcgcctc cgtgttcgtc cggctccctt gcggtggtgt tggggtaagt gttcctttaa
2281 tgtgtaaata atgtcctgtt tcttctcgag tcccagtggt cacagaaatc gcagccttgc
2341 ttccctcaaa gtgaataatt gctgccaggt gttttccata cgcaggggct gcccatgtgc
2401 ggcttcaaag gccgtgtgag ccgagagcgt tttgatcgcc gactcgggca cctttctctg
2461 gggaaggttg tctggcgcag gtggctgggg ctctggggtg cagtggctct cgctttaaga
2521 aacaggatcc tgtatgcagc cagcatctca tccccttcga agtctgtggc agtaatctgc
2581 tcacatcagg ccacgagtat ggtgcgggta ggatgcgtgc ttctgtattc tgtacctagt
2641 ttccacccga agctacaggt ggggctccca gtgcagtgac cgtgatactc atgagccacg
2701 tggagtctgt agggctactc gctgggctgt gctggcttct gtgagctgat gatatggacc
2761 tggcctgggc atatg
//