LOCUS AK303372 4603 bp mRNA linear HUM 31-JUL-2008
DEFINITION Homo sapiens cDNA FLJ54442 complete cds, highly similar to
Scavenger receptor cysteine-rich type 1 protein M160 precursor.
ACCESSION AK303372
VERSION AK303372.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4603)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4603
/clone="THYMU3012150"
/clone_lib="THYMU3"
/db_xref="H-InvDB:HIT000497996"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thymus"
CDS 20..4411
/codon_start=1
/note="highly similar to Scavenger receptor cysteine-rich
type 1 protein M160 precursor"
/protein_id="BAG64429.1"
/transl_table=1
/translation="MMLPQNSWHIDFGRCCCHQNLFSAVVTCILLLNSCFLISSFNGT
DLELRLVNGDGPCSGTVEVKFQGQWGTVCDDGWNTTASTVVCKQLGCPFSFAMFRFGQ
AVSRHGKIWLDDVSCYGNESALWECQHREWGSHNCYHGEDVGVNCYGKSLTRVGRQGE
ANLGLRLVDGNNSCSGRVEVKFQERWGTICDDGWNLNTAAVVCRQLGCPSSFISSGVV
NSPAVLRPIWLDDILCQGNELALWNCRHRGWGNHDCSHNEDVTLTCYDSSDLELRLVG
GTNRCMGRVELKIQGRWGTVCHHKWNNAAADVVCKQLGCGTALHFAGLPHLQSGSDVV
WLDGVSCSVNESFLWDCRHSGTVNFDCLHQNDVSVICSDGADLELRLADGSNNCSGRV
EVRIHEQWWTICDQNWKNEQALVVCKQLGCPFSVFGSRRAKPSNEARDIWINSISCTG
NESALWDCTYDGKAKRTCFRRSDAGVICSDKADLDLRLVGAHSPCYGRLEVKYQGEWG
TVCHDRWSTRNAAVVCKQLGCGKPMHVFGMTYFKEASGPIWLDDVSCIGNESNIWDCE
HSGWGKHNCVHREDVIVTCSGDATWGLRLVGGSNRCSGRLEVYFQGRWGTVCDDGWNS
KAAAVVCSQLDCPSSIIGMGLGNASTGYGKIWLDDVSCDGDESDLWSCRNSGWGNNDC
SHSEDVGVICSDASDMELRLVGGSSRCAGKVEVNVQGAVGILCANGWGMNIAEVVCRQ
LECGSAIRVSREPHFTERTLHILMSNSGCTGGEASLWDCIRWEWKQTACHLNMEASLI
CSAHRQPRLVGADMPCSGRVEVKHADTWRSVCDSDFSLHAANVLCRELNCGDAISLSV
GDHFGKGNGLTWAEKFQCEGSETHLALCPIVQHPEDTCIHSREVGVVCSRYTDVRLVN
GKSQCDGQVEINVLGHWGSLCDTHWDPEDARVLCRQLSCGTALSTTGGKYIGERSVRV
WGHRFHCLGNESLLDNCQMTVLGAPPCIHGNTVSVICTGSLTQPLFPCLANVSDPYLS
AVPEGSALICLEDKRLRLVDGDSRCAGRVEIYHDGFWGTICDDGWDLSDAHVVCQKLG
CGVAFNATVSAHFGEGSGPIWLDDLNCTGMESHLWQCPSRGWGQHDCRHKEDAGVICS
EFTALRLYSETETESCAGRLEVFYNGTWGSVGRRNITTAIAGIVCRQLGCGENGVVSL
APLSKTGSGFMWVDDIQCPKTHISIWQCLSAPWERRISSPAEETWITCEDRIRVRGGD
TECSGRVEIWHAGSWGTVCDDSWDLAEAEVVCQQLGCGSALAALRDASFGQGTGTIWL
DDMRCKGNESFLWDCHAKPWGQSDCGHKEDAGVRCSGQSLKSLNASSGHLALILSSIF
GLLLLVLFILFLTWCRVQKQKHLPLRVSTRRRGSLEENLFHEMETCLKREDPHGTRTS
DDTPNHGCEDASDTSLLGVLPASEATK"
BASE COUNT 1155 a 917 c 1350 g 1181 t
ORIGIN
1 aggaagagat agacccataa tgatgctgcc tcaaaactcg tggcatattg attttggaag
61 atgctgctgt catcagaacc ttttctctgc tgtggtaact tgcatcctgc tcctgaattc
121 ctgctttctc atcagcagtt ttaatggaac agatttggag ttgaggctgg tcaatggaga
181 cggtccctgc tctgggacag tggaggtgaa attccaggga cagtggggga ctgtgtgtga
241 tgatgggtgg aacactactg cctcaactgt cgtgtgcaaa cagcttggat gtccattttc
301 tttcgccatg tttcgttttg gacaagccgt gtctagacat ggaaaaattt ggcttgatga
361 tgtttcctgt tatggaaatg agtcagctct ctgggaatgt caacaccggg aatggggaag
421 ccataactgt tatcatggag aagatgttgg tgtgaactgt tatggtaaga gtctaactag
481 agtaggaagg caaggtgaag ccaatctggg tttgaggcta gtggatggaa acaactcctg
541 ttcagggaga gtggaggtga aattccaaga aaggtggggg actatatgtg atgatgggtg
601 gaacttgaat actgctgccg tggtgtgcag gcaactagga tgtccatctt cttttatttc
661 ttctggagtt gttaatagcc ctgctgtatt gcgccccatt tggctggatg acattttatg
721 ccaggggaat gagttggcac tctggaattg cagacatcgt ggatggggaa atcatgactg
781 cagtcacaat gaggatgtca cattaacttg ttatgatagt agtgatcttg aactaaggct
841 tgtaggtgga actaaccgct gtatggggag agtagagctg aaaatccaag gaaggtgggg
901 gaccgtatgc caccataagt ggaacaatgc tgcagctgat gtcgtatgca agcagttggg
961 atgtggaacc gcacttcact tcgctggctt gcctcatttg cagtcagggt ctgatgttgt
1021 atggcttgat ggtgtctcct gctccgttaa tgaatctttt ctttgggact gcagacattc
1081 cggaaccgtc aattttgact gtcttcatca aaacgatgtg tctgtgatct gctcagatgg
1141 agcagatttg gaactgcgac tagcagatgg aagtaacaat tgttcaggga gagtagaggt
1201 gagaattcat gaacagtggt ggacaatatg tgaccagaac tggaagaatg aacaagccct
1261 tgtggtttgt aagcagctag gatgtccgtt cagcgtcttt ggcagtcgtc gtgctaaacc
1321 tagtaatgaa gctagagaca tttggataaa cagcatatct tgcactggga atgagtcagc
1381 tctctgggac tgcacatatg atggaaaagc aaagcgaaca tgcttccgaa gatcagatgc
1441 tggagtaatt tgttctgata aggcagatct ggacctaagg cttgtcgggg ctcatagccc
1501 ctgttatggg agattggagg tgaaatacca aggagagtgg gggactgtgt gtcatgacag
1561 atggagcaca aggaatgcag ctgttgtgtg taaacaattg ggatgtggaa agcctatgca
1621 tgtgtttggt atgacctatt ttaaagaagc atcaggacct atttggctgg atgacgtttc
1681 ttgcattgga aatgagtcaa atatctggga ctgtgaacac agtggatggg gaaagcataa
1741 ttgtgtacac agagaggatg tgattgtaac ctgctcaggt gatgcaacat ggggcctgag
1801 gctggtgggc ggcagcaacc gctgctcggg aagactggag gtgtactttc aaggacggtg
1861 gggcacagtg tgtgatgacg gctggaacag taaagctgca gctgtggtgt gtagccagct
1921 ggactgccca tcttctatca ttggcatggg tctgggaaac gcttctacag gatatggaaa
1981 aatttggctc gatgatgttt cctgtgatgg agatgagtca gatctctggt catgcaggaa
2041 cagtgggtgg ggaaataatg actgcagtca cagtgaagat gttggagtga tctgttctga
2101 tgcatcggat atggagctga ggcttgtggg tggaagcagc aggtgtgctg gaaaagttga
2161 ggtgaatgtc cagggtgccg tgggaattct gtgtgctaat ggctggggaa tgaacattgc
2221 tgaagttgtt tgcaggcaac ttgaatgtgg gtctgcaatc agggtctcca gagagcctca
2281 tttcacagaa agaacattac acatcttaat gtcgaattct ggctgcactg gaggggaagc
2341 ctctctctgg gattgtatac gatgggagtg gaaacagact gcgtgtcatt taaatatgga
2401 agcaagtttg atctgctcag cccacaggca gcccaggctg gttggagctg atatgccctg
2461 ctctggacgt gttgaagtga aacatgcaga cacatggcgc tctgtctgtg attctgattt
2521 ctctcttcat gctgccaatg tgctgtgcag agaattaaat tgtggagatg ccatatctct
2581 ttctgtggga gatcactttg gaaaagggaa tggtctaact tgggccgaaa agttccagtg
2641 tgaagggagt gaaactcacc ttgcattatg ccccattgtt caacatccgg aagacacttg
2701 tatccacagc agagaagttg gagttgtctg ttcccgatat acagatgtcc gacttgtgaa
2761 tggcaaatcc cagtgtgacg ggcaagtgga gatcaacgtg cttggacact ggggctcact
2821 gtgtgacacc cactgggacc cagaagatgc ccgtgttcta tgcagacagc tcagctgtgg
2881 gactgctctc tcaaccacag gaggaaaata tattggagaa agaagtgttc gtgtgtgggg
2941 acacaggttt cattgcttag ggaatgagtc acttctggat aactgtcaaa tgacagttct
3001 tggagcacct ccctgtatcc atggaaatac tgtctctgtg atctgcacag gaagcctgac
3061 ccagccactg tttccatgcc tcgcaaatgt atctgaccca tatttgtctg cagttccaga
3121 gggcagtgct ttgatctgct tagaggacaa acggctccgc ctagtggatg gggacagccg
3181 ctgtgccggg agagtagaga tctatcacga cggcttctgg ggcaccatct gtgatgacgg
3241 ctgggacctg agcgatgccc acgtggtgtg tcaaaagctg ggctgtggag tggccttcaa
3301 tgccacggtc tctgctcact ttggggaggg gtcagggccc atctggctgg atgacctgaa
3361 ctgcacagga atggagtccc acttgtggca gtgcccttcc cgcggctggg ggcagcacga
3421 ctgcaggcac aaggaggacg caggggtcat ctgctcagaa ttcacagcct tgaggctcta
3481 cagtgaaact gaaacagaga gctgtgctgg gagattggaa gtcttctata acgggacttg
3541 gggcagcgtc ggcaggagga acatcaccac agccatagca ggcattgtgt gcaggcagct
3601 gggctgtggg gagaatggag ttgtcagcct cgccccttta tctaagacag gctctggttt
3661 catgtgggtg gatgacattc agtgtcctaa aacgcatatc tccatatggc agtgcctgtc
3721 tgccccatgg gagcgaagaa tctccagccc agcagaagag acctggatca catgtgaaga
3781 tagaataaga gtgcgtggag gagacaccga gtgctctggg agagtggaga tctggcacgc
3841 aggctcctgg ggcacagtgt gtgatgactc ctgggacctg gccgaggcgg aagtggtgtg
3901 tcagcagctg ggctgtggct ctgctctggc tgccctgagg gacgcttcgt ttggccaggg
3961 aactggaacc atctggttgg atgacatgcg gtgcaaagga aatgagtcat ttctatggga
4021 ctgtcacgcc aaaccctggg gacagagtga ctgtggacac aaggaagatg ctggcgtgag
4081 gtgctctgga cagtcgctga aatcactgaa tgcctcctca ggtcatttag cacttatttt
4141 atccagtatc tttgggctcc ttctcctggt tctgtttatt ctatttctca cgtggtgccg
4201 agttcagaaa caaaaacatc tgcccctcag agtttcaacc agaaggaggg gttctctcga
4261 ggagaattta ttccatgaga tggagacctg cctcaagaga gaggacccac atgggacaag
4321 aacctcagat gacaccccca accatggttg tgaagatgct agcgacacat cgctgttggg
4381 agttcttcct gcctctgaag ccacaaaatg actttagact tccagggctc accagctcaa
4441 cctctaaata tctttgaagg agacaacaac ttttaaatga ataaagagga agtcaagttg
4501 ccctatggaa aacttgtcca aataacattt cttgaacaat aggagaacag ctaaattgat
4561 aaagactggt gataataaaa attgaattat gtatatcact gtt
//