LOCUS AK302393 4037 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ53242 complete cds, highly similar to
CLIP-associating protein 1.
ACCESSION AK302393
VERSION AK302393.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4037)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4037
/clone="TESTI4000480"
/clone_lib="TESTI4"
/db_xref="H-InvDB:HIT000497017"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 144..3911
/codon_start=1
/note="highly similar to CLIP-associating protein 1"
/protein_id="BAH13694.1"
/transl_table=1
/translation="MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTT
RRLGSSTLGSKSSAAKEGAGAVDEEDFIKAFDDVPVVQIYSSRDLEESINKIREILSD
DKHDWEQRVNALKKIRSLLLAGAAEYDNFFQHLRLLDGAFKLSAKDLRSQVVREACIT
LGHLSSVLGNKFDHGAEAIMPTIFNLIPNSAKIMATSGVVAVRLIIRHTHIPRLIPVI
TSNCTSKSVAVRRRCFEFLDLLLQEWQTHSLERHISVLAETIKKGIHDADSEARIEAR
KCYWGFHSHFSREAEHLYHTLESSYQKALQSHLKNSDSIVSLPQSDRSSSSSQESLNR
PLSAKRSPTGSTTSRASTVSTKSVSTTGSLQRSRSDIDVNAAASAKSKVSSSSGTTPF
SSAAALPPGSYASLGRIRTRRQSSGSATNVASTPDNRGRSRAKVVSQSQRSRSANPAG
AGSRSSSPGKLLGSGYGGLTGGSSRGPPVTPSSEKRSKIPRSQGCSRETSPNRIGLDR
FGLGQPGRIPGSVNAMRVLSTSTDLEAAVADALKKPVRRRYEPYGMYSDDDANSDASS
VCSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRTLSR
VELKRLCEIFTRMFADPHSKIADSEAECEDKEGNLFPSEVSCTRVFSMFLETLVDFII
IHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRDSFPFDQQFNILMRFIV
DQTQTPNLKVKVAILKYIESLARQMDPTDFVNSSETRLAVSRIITWTTEPKSSDVRKA
AQIVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNTSVGSPSNTIGRTP
SRHTSSRTSPLTSPTNCSHGGLSPSMLDYDTENLNSEEIYSSLRGVTEAIEKFSFRSQ
EDLNEPIKRDGKKECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRA
FPGPRARDYNPYPYSDAINTYDKTALKEAVFDDDMEQLRDVPIDHSDLVADLLKELSN
HNERVEERKGALLELLKITREDSLGVWEEHFKTILLLLLETLGDKDHSIRALALRVLR
EILRNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLASSIHPEQCIKVLCP
IIQTADYPINLAAIKMQTKVVERIAKESLLQLLVDIIPGLLQGYDNTESSVRKASVFC
LVAIYSVIGEDLKPHLAQLTGSKMKLLNLYIKGAQTTNSNSSSSSDVSTHS"
BASE COUNT 1140 a 962 c 963 g 972 t
ORIGIN
1 gttactttta aaaagggaag ataatggaaa catcataaga aacacaatca tgtaaggcat
61 ctttccagtt ctttagtaac tgctggattt gaaagttgaa tgtaattttt acaaaatttg
121 atgaagtcca gaaatctgga aacatgatac aatctgcaaa tgataaaaat ttcgacgatg
181 aagattctgt ggatggtaac agaccttcct ctgctagttc tacatcatcc aaggctccac
241 caagttctcg gagaaacgtt ggaatgggaa ccacccgccg gcttggttca tccacccttg
301 gatccaagtc ttcagctgca aaagaaggag ctggtgctgt tgatgaagag gattttatta
361 aagcatttga tgatgtacct gtagtacaga tttattccag ccgagacctt gaggaatcca
421 taaacaaaat tagggaaata ttatctgatg acaagcatga ttgggagcag agagtaaatg
481 ctctaaaaaa gattagatct ttacttttgg ctggtgctgc tgagtatgat aacttctttc
541 aacatttgcg tcttttggat ggagccttta aactctctgc taaggacctg cggtctcagg
601 tagtgcggga ggcttgtatc acgttggggc atctgtcatc agttctgggg aataagtttg
661 accatggagc tgaagccatt atgccaacta tctttaattt aattccaaac agtgccaaaa
721 ttatggccac atctggtgtt gtagctgtta ggttaattat tcggcacaca cacatcccta
781 ggttaatacc tgtcataaca agcaactgta cctctaagtc tgtcgcagtt agaaggcgct
841 gttttgaatt tttagatttg cttttacaag aatggcagac acattcacta gaacgacaca
901 tatcagtatt agctgaaaca ataaagaagg gaatacatga tgctgattcc gaagcaagaa
961 tagaagccag aaaatgttac tggggtttcc acagtcactt cagcagagaa gcagagcact
1021 tgtaccacac cttggagtcc tcctaccaga aagccctgca gtcccacctg aagaactcag
1081 acagcatagt gtctctgcct cagtcagacc gctcatcttc cagctctcaa gagagtctaa
1141 atcgtccgct gtctgccaaa agaagtccta ctggaagtac cacatctaga gcttctacag
1201 ttagtaccaa atctgtgtca acgactgggt ccctccagcg atctcgaagt gatattgatg
1261 tgaacgcagc agccagtgcc aaatccaaag tctcctcatc ttcgggcacg acgcctttca
1321 gctctgcagc agctttgcct ccagggtcat acgcatcctt aggtcggatc cgcacaagac
1381 ggcaaagctc tgggagtgcc accaacgtcg cctctacacc tgataaccgg ggccgcagtc
1441 gcgctaaagt ggtttcacag tcccagcgat ccagatctgc taatcctgct ggtgctggca
1501 gccggtcaag ttccccagga aaattgttgg gaagtggtta tggtggactt actgggggct
1561 cctcacgagg cccacctgtg acaccgtctt cagaaaagcg aagcaagatt cccaggagcc
1621 agggatgtag ccgggaaaca agtccaaacc gaataggatt agatcggttt gggcttggcc
1681 agccaggaag aatacctggt tctgtgaatg ccatgagagt tctgagcaca agtacagatc
1741 ttgaagctgc tgttgctgat gctttgaaga agcctgtgag gaggagatat gagccgtatg
1801 ggatgtattc tgacgatgat gccaacagtg atgcctcaag tgtttgctct gagcgctcat
1861 atggctccag gaatggtggc attccccatt atctgcggca gactgaggat gtagcagaag
1921 ttctcaacca ctgtgctagt tcaaactggt cagaaaggaa agaagggctt ctgggcctgc
1981 agaacttact gaagagccaa agaacactga gtcgagttga actgaaaagg ttgtgtgaga
2041 tcttcactcg gatgtttgct gaccctcata gcaagattgc tgattcagaa gcagaatgtg
2101 aggataaaga aggaaatttg tttccatcag aagtctcttg tacaagagtt ttcagtatgt
2161 ttttggagac tcttgtggat tttataataa ttcataagga tgatttacaa gactggcttt
2221 ttgttcttct cacacaatta cttaagaaaa tgggagcaga tttacttgga tctgtgcaag
2281 caaaagttca aaaggctcta gatgtcacaa gggactcctt tccatttgat caacaattta
2341 acattttgat gagatttatt gtggatcaaa ctcaaactcc aaacctcaag gtcaaagttg
2401 caatcctgaa atacattgag tctctggcca gacagatgga tccaacagat tttgtaaact
2461 ctagtgagac aaggcttgct gtttctagaa tcataacctg gacaacagaa ccaaagagtt
2521 cagacgtgag aaaggcagca cagattgtgc taatctctct gtttgaattg aatactcctg
2581 aatttaccat gttacttggt gccttgccaa aaacattcca ggatggtgcc accaaactcc
2641 tgcacaacca cctcaagaat tccagtaaca ccagtgtggg ctctccaagc aatacgattg
2701 gccggacgcc ctcccgacac accagcagca ggaccagccc cctgacctca cccaccaact
2761 gttcccatgg gggtctgtct ccaagcatgc tggactatga tacagagaac ctgaactctg
2821 aagaaatcta tagttctcta cgtggagtta cagaagccat tgaaaagttt agttttcgaa
2881 gccaagaaga tctgaatgag ccaattaaac gagatggcaa aaaggagtgt gatattgtgt
2941 cccgcgatgg gggcgctgcc tcccctgcca ctgagggccg ggggggtagt gaagtagaag
3001 gaggccggac agctctggat aacaagacct cactactcaa cacccagcct ccgcgcgcct
3061 tcccggggcc gcgggcgcga gactacaacc cgtaccccta ctcagatgcc atcaacacct
3121 acgacaagac cgccctgaaa gaggctgtgt tcgatgacga catggagcag cttcgagacg
3181 tgcccatcga ccattctgac ctggtggctg accttctgaa agagctgtcc aaccacaatg
3241 agcgagtgga ggaacggaag ggagccctgc tggagctgct caagatcacg cgggaagaca
3301 gccttggtgt ctgggaggag cacttcaaga ccattctgct cctgctgctg gagacccttg
3361 gagacaaaga ccattcaatt cgagcactgg cgttaagagt tttgagggaa attctgagaa
3421 atcaaccagc aagatttaaa aactacgccg agctgacgat tatgaagact ctggaagccc
3481 acaaagactc ccataaggag gtggtgagag cggctgagga ggctgcgtcc accctggcca
3541 gttccatcca cccggagcag tgcatcaagg tgctctgccc catcatccag acggccgact
3601 accccatcaa ccttgctgcc atcaagatgc agaccaaagt cgtcgagagg atcgcaaagg
3661 agtcattgct gcagctcctt gtcgacatca tcccaggctt gctgcagggt tatgacaaca
3721 ccgaaagtag tgtgcgtaag gccagcgtgt tttgcttagt ggcaatttat tccgtaatcg
3781 gagaagacct gaaacctcac cttgcacagc tcacagggag caagatgaag ctactaaact
3841 tatacataaa gggggcccag accaccaaca gcaacagcag ctcctcctcc gatgtctcca
3901 cgcacagcta atggcagtac ctgtctcttg tgtagaccta gaagcaatcg gtggtgcctc
3961 tcagagacct ttccccaccc ccttcatcgg ctgcccagtc agtacaagga ggcccacaaa
4021 tatttattac aatcagt
//