LOCUS AK301997 2189 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ55940 complete cds, highly similar to
Transcription intermediary factor 1-gamma.
ACCESSION AK301997
VERSION AK301997.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2189)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2189
/clone="TESTI2020860"
/clone_lib="TESTI2"
/db_xref="H-InvDB:HIT000496621"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 245..2146
/codon_start=1
/note="highly similar to Transcription intermediary
factor 1-gamma"
/protein_id="BAG63401.1"
/transl_table=1
/translation="MQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTTQQHPRQAAPQML
QQQPPRLISVQTMQRGNMNCGAFQAHQMRLAQNAARIPGIPRHSGPQYSMMQPHLQRQ
HSNPGHAGPFPVVSVHNTTINPTSPTTATMANANRGPTSPSVTAIELIPSVTNPENLP
SLPDIPPIQANVVPMMHSWYEFGAREKTQDQNVLEDAGSSSLDNLLSRYISGSHLPPQ
PTSTMNPSPGPSALSPGSSGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTSLSFKS
DQVKVKQEPGTEDEICSFSGGVKQEKTEDGRRSACMLSSPESSLTPPLSTNLHLESEL
DALASLENHVKIEPADMNESCKRSGLSSLVNGKSPIRSLMHRSARIGGDGNNKDDDPN
EDWCAVCQNGGDLLRCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCD
NLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKIIKKPMD
LSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADS
EVAQAGKAVALYFEDKLTEIYSDRTFAPLPEFEQEEDDGEVTEDSDEDFIQPRRKRLK
SDERPVHIK"
BASE COUNT 712 a 512 c 475 g 490 t
ORIGIN
1 aattgcaagt ggcagcagca cagcactact atacagcaag cgactgatta ctttccagtt
61 gcgtcatatt ttgaaagcac ggtgtgatcc tgtccctgct gctaatggag caatacgttt
121 ccattgtgat cccaccttct gggcaaagaa tgtagtcaat ttagttgggc aagttcctcc
181 agggacaaac cacattagta aaacccctgg acagattaac ttagcacagc ttcgactcca
241 gcacatgcaa caacaagtat atgcacagaa acatcagcag ttgcaacaga tgaggatgca
301 gcaaccacca gcacctgtac caactacaac aacaacaaca caacagcatc ctagacaagc
361 agcccctcag atgttacaac aacagcctcc tcgattgatc agtgtgcaaa caatgcaaag
421 aggcaacatg aactgtggag cttttcaagc ccatcagatg agactggctc agaatgctgc
481 cagaatacca gggataccca ggcacagcgg ccctcaatat tccatgatgc agccacacct
541 ccaaagacaa cactcaaacc cagggcatgc tggacccttt cccgtagtat cggtacacaa
601 caccacaatc aacccaacga gccctactac agcaactatg gcaaatgcaa accgaggtcc
661 caccagccca tctgttacag caatagagct aatcccctca gttaccaatc cagaaaacct
721 tccatcgctg ccagatattc cacccataca ggcaaacgtt gttccgatga tgcactcctg
781 gtatgagttt ggagccagag agaagaccca ggaccaaaat gtgttggaag atgctggctc
841 aagtagttta gataatctac taagtagata catctcaggc agtcacctac ccccacagcc
901 tacaagcacc atgaatcctt ctccaggtcc ctctgccctt tctccgggat catcaggttt
961 atccaattct cacacacctg tgagaccccc aagtacttct agtactggca gtcgaggcag
1021 ctgtgggtca tcaggaagaa ctgctgagaa gacaagtctt agtttcaaat ctgatcaggt
1081 gaaggtcaag caagaacctg ggactgaaga tgaaatatgt agcttttcag gaggtgtaaa
1141 acaagaaaaa acagaggatg gcaggaggag tgcttgcatg ttgagcagtc ctgagagtag
1201 cttgacacca cctctctcaa ccaacctgca tctagaaagt gaattggatg cattggcaag
1261 cctggaaaac catgtgaaaa ttgaacctgc agatatgaat gaaagctgca aacggtcagg
1321 gctcagcagc cttgttaatg gaaagtcccc aattcgaagc ctcatgcaca ggtcggcaag
1381 gattggagga gatggcaaca ataaagatga tgacccaaat gaagactggt gtgctgtctg
1441 ccaaaacgga ggagatctct tgcgctgcga aaaatgtcca aaggtctttc atctaacttg
1501 tcatgttcca acactactta gctttccaag tggggactgg atatgcacat tttgtagaga
1561 tattggaaag ccagaagttg aatatgattg tgataatttg caacatagta agaaggggaa
1621 aactgcgcag gggttaagcc ccgtggacca aaggaaatgt gaacgtcttc tgctttacct
1681 ctattgccat gaattaagta ttgaattcca ggagcctgtt cctgcttcga taccaaacta
1741 ctataaaatt ataaagaaac caatggattt atccaccgtg aaaaagaagc ttcagaaaaa
1801 acattcccaa cactaccaaa tcccggatga ctttgtggcc gatgtccgtt tgatcttcaa
1861 gaactgtgaa aggtttaatg aaatgatgaa agttgttcaa gtttatgcag acacacaaga
1921 gattaatttg aaggctgatt cagaagtagc tcaggcaggg aaagcagttg cattgtactt
1981 tgaagataaa ctcacagaga tctactcaga caggaccttc gcacctttgc cagagtttga
2041 gcaggaagag gatgatggtg aggtaactga ggactctgat gaagacttta tacagccccg
2101 cagaaaacgc ctaaagtcag atgagagacc agtacatata aagtaaaatg acatggattt
2161 aaatcaattg tttaaaaaaa aaaaaaacg
//