LOCUS AK301800 1456 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56556 complete cds, highly similar to
Alpha-1-syntrophin.
ACCESSION AK301800
VERSION AK301800.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1456)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1456
/clone="TESTI2007643"
/clone_lib="TESTI2"
/db_xref="H-InvDB:HIT000496424"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 4..1296
/codon_start=1
/note="highly similar to Alpha-1-syntrophin"
/protein_id="BAG63252.1"
/transl_table=1
/translation="MASGRRAPRTGLLELRAGAGSGAGGERWQRVLLSLAEDVLTVSP
ADGDPGPEPGAPREQEPAQLNGAAEPGAGPPQLPEALLLQRRRVTVRKADAGGLGISI
KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQVLKKTGK
EVVLEVKYMKDVSPYFKNSTGGTSVGWDSPPASPLQRQPSSPGPTPRNFSEAKHMSLK
MAYVSKRCTPNDPEPRYLEICSADGQDTLFLRAKDETREALSRPARTAPLIATRLVHS
GPSKGSVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQE
VSTACTWNGRPCSLSVHIDKGFTLWAAEPGAARAVLLRQPFEKLQMSSDDGASLLFLD
FGGAEGEIQLDLHSCPKTIVFIIHSFLSAKVTRLGLLA"
BASE COUNT 263 a 461 c 477 g 255 t
ORIGIN
1 aagatggcgt ccggcaggcg cgccccgcgc accgggctgc tggagctgcg cgccggggcg
61 ggctcggggg ccggcggcga gcgatggcag cgggtgctgc tgagtctggc ggaggacgtg
121 ctgaccgtga gccccgccga cggcgaccct ggtcccgagc ccggcgctcc gcgggagcag
181 gagcccgcgc agctcaacgg cgccgcggag ccgggcgccg ggcccccgca gctgccagag
241 gcgctactgc tccagcggcg ccgcgtgacg gtgcgcaagg ccgacgccgg tgggctgggc
301 atcagcatca aaggcggccg ggagaacaag atgcctattc tcatttccaa gatcttcaag
361 ggattggcag ctgaccagac agaggccctt tttgtggggg atgccatcct gtctgtgaat
421 ggggaagact tgtcctctgc tacccatgat gaggcggtgc aggtcctcaa gaagacaggc
481 aaggaggtgg tgctggaggt caagtatatg aaggacgtct caccgtattt caagaactct
541 actggtggga cctcggtcgg ctgggactca cctcctgcct caccccttca gcggcagcct
601 tcctcccctg gccccacacc ccggaacttc agcgaggcca aacacatgtc cttgaagatg
661 gcatatgtct cgaagaggtg cacccccaat gacccggagc ccaggtatct ggagatctgc
721 tcggcagatg gtcaagacac cctcttcctg agggccaagg atgagacccg cgaggccctg
781 agccggccag cccgtactgc cccactcatc gccaccagac tggtgcactc aggcccctcc
841 aagggctcag tgccctacga tgcagagctc tcttttgccc tgcgcacggg cacgcgtcac
901 ggtgtggaca ctcacctgtt cagcgtggag tcaccgcagg agctggctgc ctggacccgc
961 cagcttgtgg atggctgtca ccgggccgcc gagggtgtgc aggaggtgtc tacagcctgc
1021 acgtggaatg ggcgtccctg cagcctgtct gtgcacatcg acaagggctt cacactgtgg
1081 gcggctgagc caggtgcagc ccgagctgtg ctcctgcgac agcccttcga gaagctgcag
1141 atgtcttcag atgacggtgc cagtctcctt ttcctggatt ttggaggtgc tgaaggcgag
1201 atccagctgg acctgcactc gtgtcccaaa accatagtct tcatcatcca ctccttcctg
1261 tcggccaaag tcacccgcct cgggctgttg gcctagaagt cgccggatgc actagccctg
1321 aagaggggtg tccatgacat ggcctgagct gggcctccac cgactgcctg ctcacccctg
1381 ggctgaggga agggagagga gaggaacaag ggcctccgaa accccaaccc tgagggagac
1441 tggattggtc ttgggg
//