LOCUS AK301676 1960 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ51487 partial cds, highly similar to
Desmoplakin.
ACCESSION AK301676
VERSION AK301676.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1960)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1960
/clone="TESOP2005823"
/clone_lib="TESOP2"
/db_xref="H-InvDB:HIT000496300"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="esophagus, tumor tissue"
CDS 107..>1960
/codon_start=1
/note="highly similar to Desmoplakin"
/protein_id="BAG63149.1"
/transl_table=1
/translation="MRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKI
KADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLY
DWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTL
QTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQ
HLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYK
QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQ
YYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIADLELH
YQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLVIQLPGYPQHQTVTTTEITHHG
TCQDVNHNKVIETNRENDKQETWMLMELQKIRRQIEHCEGRMTLKNLPLADQGSSHHI
TVKINELKSVQNDSQAIAEVLNQLKDMLANFRGSEKYCYLQNEVFGLFQKLENINGVT
DGYLNSLCTVRALLQAILQTEDMLKVYKARLTEEETVCLDLDKVEAYRCGLK"
BASE COUNT 609 a 466 c 492 g 393 t
ORIGIN
1 gaggagactc gctccgccgc cgaccaacac caacacccag ctccgacgca gctcctctgg
61 ctgggatgag ttcaccaaac atgtcaccag tgaatgtttg gggtggatga ggcagcaaag
121 ggcggagatg gacatggtgg cctggggtgt ggacctggcc tcagtggagc agcacattaa
181 cagccaccgg ggcatccaca actccatcgg cgactatcgc tggcagctgg acaaaatcaa
241 agccgacctg cgcgagaaat ctgcgatcta ccagttggag gaggagtatg aaaacctgct
301 gaaagcgtcc tttgagagga tggatcacct gcgacagctg cagaacatca ttcaggccac
361 gtccagggag atcatgtgga tcaatgactg cgaggaggag gagctgctgt acgactggag
421 cgacaagaac accaacatcg ctcagaaaca ggaggccttc tccatacgca tgagtcaact
481 ggaagttaaa gaaaaagagc tcaataagct gaaacaagaa agtgaccaac ttgtcctcaa
541 tcagcatcca gcttcagaca aaattgaggc ctatatggac actctgcaga cgcagtggag
601 ttggattctt cagatcacca agtgcattga tgttcatctg aaagaaaatg ctgcctactt
661 tcagtttttt gaagaggcgc agtctactga agcatacctg aaggggctcc aggactccat
721 caggaagaag tacccctgcg acaagaacat gcccctgcag cacctgctgg aacagatcaa
781 ggagctggag aaagaacgag agaaaatcct tgaatacaag cgtcaggtgc agaacttggt
841 aaacaagtct aagaagattg tacagctgaa gcctcgtaac ccagactaca gaagcaataa
901 acccattatt ctcagagctc tctgtgacta caaacaagat cagaaaatcg tgcataaggg
961 ggatgagtgt atcctgaagg acaacaacga gcgcagcaag tggtacgtga cgggcccggg
1021 aggcgttgac atgcttgttc cctctgtggg gctgatcatc cctcctccga acccactggc
1081 cgtggacctc tcttgcaaga ttgagcagta ctacgaagcc atcttggctc tgtggaacca
1141 gctctacatc aacatgaaga gcctggtgtc ctggcactac tgcatgattg acatagagaa
1201 gatcagggcc atgacaatcg ccaagctgaa aacaatgcgg caggaagatt acatgaagac
1261 gatagccgac cttgagttac attaccaaga gttcatcaga aatagccaag gctcagagat
1321 gtttggagat gatgacaagc ggaaaataca gtctcagttc accgatgccc agaagcatta
1381 ccagaccctg gtcattcagc tccctggcta tccccagcac cagacagtga ccacaactga
1441 aatcactcat catggaacct gccaagatgt caaccataat aaagtaattg aaaccaacag
1501 agaaaatgac aagcaagaaa catggatgct gatggagctg cagaagattc gcaggcagat
1561 agagcactgc gagggcagga tgactctcaa aaacctccct ctagcagacc aggggtcttc
1621 tcaccacatc acagtgaaaa ttaacgagct taagagtgtg cagaatgatt cacaagcaat
1681 tgctgaggtt ctcaaccagc ttaaagatat gcttgccaac ttcagaggtt ctgaaaagta
1741 ctgctattta cagaatgaag tatttggact atttcagaaa ctggaaaata tcaatggtgt
1801 tacagatggc tacttaaata gcttatgcac agtaagggca ctgctccagg ctattctcca
1861 aacagaagac atgttaaagg tttataaagc caggctcact gaggaggaaa ctgtctgcct
1921 ggacctggat aaagtggaag cttaccgctg tggactgaag
//