LOCUS AK301548 2659 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ50262 complete cds, highly similar to
Sortilin precursor.
ACCESSION AK301548
VERSION AK301548.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2659)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2659
/clone="TBAES2001235"
/clone_lib="TBAES2"
/db_xref="H-InvDB:HIT000496172"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="breast, tumor tissue"
CDS 437..2521
/codon_start=1
/note="highly similar to Sortilin precursor"
/protein_id="BAG63045.1"
/transl_table=1
/translation="MTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSG
KVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENG
LWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCTDLGALELWRTSDLGKSFK
TIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILA
ANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGV
YITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQK
LNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILD
SGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWG
FTESFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRL
RKSSVCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCL
YGREEHLTTNGYRKIPGDKCQGGVNPVREVKDLKKKCTSNFLSPEKQNSKSNSVPIIL
AIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTNKS
GYHDDSDEDLLE"
BASE COUNT 715 a 605 c 649 g 690 t
ORIGIN
1 aaaaaactta tgatgaataa agccaggaac tcttgcttat tttctgtcct ccctctgctc
61 ctgtcactaa ctacttctgt aaacataact tcccaacttc tactccaact ttaaagcatc
121 tggttcctta aataaacagg ccctgtagag aggccgtgtt gtatggggtg tcagctctgg
181 gaagaatgcg tgtgtttgtt tgctggcgct ggcagggttg agtccaagct gacaggactg
241 agtgtgcctg tcagaggctt cagggagctg ccgctgaaga cctcggcctg ttgttgtgaa
301 tcgccagacc tttgtaacac ccggaagtct gaagcatgtg tttgatgatc tcagaggctc
361 agtatccttg tcctgggttg gagatagcac tggggtcatt ctagtcttga ctaccttcca
421 tgtaccactg gtaattatga cttttggaca gtccaagcta tatcgaagtg aggattatgg
481 gaagaacttt aaggatatta cagatctcat caataacacc tttattcgga ctgaatttgg
541 catggctatt ggtcctgaga actctggaaa ggtggtgtta acagcagagg tgtctggagg
601 aagtcgtgga ggaagaatct tcagatcatc agattttgcg aagaattttg tgcaaacaga
661 tctccctttt catcctctca ctcagatgat gtatagccct cagaattctg attatctttt
721 agctctcagc actgaaaatg gcctgtgggt gtccaagaat tttgggggaa aatgggaaga
781 aatccacaaa gcagtatgtt tggccaaatg gggatcagac aacaccatct tctttacaac
841 ctatgcaaat ggctcctgca ctgaccttgg ggctctggaa ttatggagaa cttcagactt
901 gggaaaaagc ttcaaaacta ttggtgtgaa aatctactca tttggtcttg ggggacgttt
961 cctttttgcc tctgtgatgg ctgataagga taccacaaga aggatccacg tttcaacaga
1021 tcaaggggac acatggagca tggcccagct cccctccgtg ggacaggaac agttctattc
1081 tattctggca gcaaatgatg acatggtatt catgcatgta gatgaacctg gagacactgg
1141 gtttggcaca atctttacct cagatgatcg aggcattgtc tattccaagt ctttggaccg
1201 acatctctac actaccacag gcggagagac ggactttacc aacgtgacct ccctccgcgg
1261 cgtctacata acaagcgtgc tctccgaaga taattctatc cagaccatga tcacttttga
1321 ccaaggagga aggtggacgc acctgaggaa gcctgaaaac agtgaatgtg atgctacagc
1381 aaaaaacaag aatgagtgca gccttcatat tcatgcttcc tacagcatct cccagaaact
1441 gaatgttcca atggccccac tctcagagcc gaatgccgta ggcattgtca ttgctcatgg
1501 tagcgtgggg gatgccatct cagtgatggt tccagatgtg tacatctcag atgatggggg
1561 ttactcctgg acaaagatgc tggaaggacc ccactattac accatcctgg attctggagg
1621 catcattgtg gccattgagc acagcagccg tcctatcaat gtgattaagt tctccacaga
1681 cgaaggtcaa tgctggcaaa cctacacgtt caccagggac cccatctatt tcactggcct
1741 agcttcagaa cctggagcta ggtccatgaa tatcagcatt tggggcttca cagaatcttt
1801 cctgaccagc cagtgggtct cctacaccat tgattttaaa gatatccttg aaaggaactg
1861 tgaagagaag gactatacca tatggctggc acactccaca gaccctgaag attatgaaga
1921 tggctgcatt ttgggctaca aagaacagtt tctgcggcta cgcaagtcat ccgtgtgtca
1981 gaatggtcga gactatgttg tgaccaagca gccctccatc tgcctctgtt ccctggagga
2041 ctttctctgt gattttggct actaccgtcc agaaaatgac tccaagtgtg tggaacagcc
2101 agaactgaag ggccacgacc tggagttttg tctgtacgga agagaagaac acctaacaac
2161 aaatgggtac cggaaaattc caggggacaa atgccagggt ggggtaaatc cagttcgaga
2221 agtaaaagac ttgaaaaaga aatgcacaag caactttttg agtccggaaa aacagaattc
2281 caagtcaaat tctgttccaa ttatcctggc catcgtggga ttgatgctgg tcacagtcgt
2341 agcaggagtg ctcattgtga agaaatatgt ctgtggggga aggttcctgg tgcatcgata
2401 ctctgtgctg cagcagcatg cagaggccaa tggtgtggat ggtgtggatg ctttggacac
2461 agcctcccac actaataaaa gtggttatca tgatgactca gatgaggacc tcttggaata
2521 gctcttcaga ggagctggac ccagcatgga tggtggaacc acagtacctc ttacactccc
2581 tgtggctcca acttcaggaa ataaatttcc cattgcgagg gacccagctc tgtttctgct
2641 gcttccatca aagccaaaa
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