LOCUS AK301546 1880 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ53672 complete cds, highly similar to
2-hydroxyphytanoyl-CoA lyase (EC 4.1.-.-).
ACCESSION AK301546
VERSION AK301546.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1880)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1880
/clone="TBAES2001114"
/clone_lib="TBAES2"
/db_xref="H-InvDB:HIT000496170"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="tumor tissue"
/organism="Homo sapiens"
/tissue_type="breast, tumor tissue"
CDS 107..1762
/codon_start=1
/note="highly similar to 2-hydroxyphytanoyl-CoA lyase (EC
4.1.-.-)"
/protein_id="BAG63043.1"
/transl_table=1
/translation="MPDSNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIA
IAAQQLGIKYIGMRNEQAACYAASAIGYLTSRPLLVIGGSSERNQETMGAFQEFPQVE
ACRLYTKFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVNLQVNVNSIKYM
ERCMSPPISMAETSAVCTAASVIRNAKQPLLIIGKGAAYAHAEESIKKLVEQYKLPFL
PTPMGKGVVPDNHPYCVGAARSRALQFADVIVLFGARLNWILHFGLPPRYQPDVKFIQ
VDICAEELGNNVKPAVTLLGNIHAVTKQLLEELDKTPWQYPPESKWWKTLREKMKSNE
AASKELASKKSLPMNYYTVFYHVQEQLPRDCFVVSEGANTMDIGRTVLQNYLPRHRLD
AGTFGTMGVGLGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVETICRYNLPIIL
LVVNNNGIYQGFDTDTWKEMLKFQDATAVVPPMCLLPNSHYEQVMTAFGGKGYFVQTP
EELQKSLRQSLADTTKPSLINIMIEPQATRKAQDFHWLTRSNM"
BASE COUNT 529 a 385 c 458 g 508 t
ORIGIN
1 agaggtgcag taccagaggt ggcgtgctgc cgacttcgcg tttgccttgc tggatgattc
61 cgcttgtttg ccggctgcgt gagtgcttag agcttttcgg tggaagatgc cggacagtaa
121 cttcgcagag cgcagcgagg agcaggtgtc tggtgctaaa gtcatcgctc aggccctgaa
181 aacgcaagat gtggagtaca tatttggcat cgtaggcatc ccagtgaccg aaatcgccat
241 tgctgcccag cagctaggca tcaagtacat cgggatgagg aatgagcaag cggcttgtta
301 tgctgcctcc gcgattggat atctgacaag caggcccttg cttgtgattg gtggttcctc
361 tgaaagaaac caagaaacaa tgggagcttt ccaggagttt cctcaggttg aagcttgtag
421 attatatacc aagttctctg cccgcccaag cagcatagaa gctattcctt ttgttattga
481 aaaggcagtg agaagcagta tctatggtcg tccaggtgct tgctatgttg acataccagc
541 agattttgtg aaccttcagg tgaatgtgaa ttctataaag tacatggaac gctgcatgtc
601 acctcctatt agcatggcag aaacctctgc tgtgtgcacg gcggcttctg ttattaggaa
661 tgccaaacaa ccccttctta tcatcgggaa aggtgctgct tacgctcatg cagaagagag
721 tatcaagaaa ttggtggagc aatataaact gccatttttg cccaccccta tggggaaggg
781 tgttgtccct gacaaccatc catactgtgt aggtgcagcc agatccaggg ctttgcaatt
841 tgctgatgta attgtgttat ttggtgccag actaaattgg attttacatt ttggactgcc
901 tccaagatat cagccagatg tgaagtttat ccaggttgat atctgtgcag aagaattggg
961 gaataatgta aagcccgctg ttactttgct aggaaacata catgctgtca ctaagcagct
1021 tttagaggaa cttgataaaa caccatggca gtatcctcca gagagcaagt ggtggaaaac
1081 tctgagagaa aaaatgaaga gcaatgaagc tgcatccaag gaactagctt ctaaaaaatc
1141 cctgcctatg aattattaca cagtattcta ccatgttcaa gaacaactac ctagagactg
1201 tttcgtggta agtgaaggag caaatactat ggacattgga cggactgtgc ttcagaacta
1261 ccttcctcgt cacaggcttg atgctggtac tttcggaaca atgggagttg gtttgggatt
1321 tgctattgca gctgccgtgg tggctaaaga tagaagccct gggcaatgga tcatctgtgt
1381 ggaaggagac agtgcatttg ggttttctgg catggaggta gaaaccatct gcaggtacaa
1441 cttgccaatc atactgttgg tagtgaataa caatggaatt taccaaggtt ttgatacaga
1501 tacttggaaa gaaatgttaa aatttcaaga tgctactgca gtggtccctc caatgtgttt
1561 gctgccaaat tcacattatg agcaagtcat gactgcattt ggaggcaaag ggtattttgt
1621 acaaacacca gaagaactcc aaaaatccct gaggcagagc ctagcagaca caactaaacc
1681 ttctcttatc aacatcatga ttgagccaca agccacacgg aaggcccagg attttcattg
1741 gctgacccgc tctaatatgt aaataaagac gccagttggt ggtcttgagt tttctctttc
1801 ttgcaagatg aaattttatt ttccacagca aaattactct actgttaaaa ttgtgcaaaa
1861 taaaataaac atttaaaatg
//