LOCUS AK301513 3489 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ56258 complete cds, highly similar to
Squamous cell carcinoma antigen recognized by T-cells 2 precursor.
ACCESSION AK301513
VERSION AK301513.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3489)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3489
/clone="SYNOV4008158"
/clone_lib="SYNOV4"
/db_xref="H-InvDB:HIT000496137"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="synovial membrane tissue from rheumatoid
arthritis"
CDS 78..3011
/codon_start=1
/note="highly similar to Squamous cell carcinoma antigen
recognized by T-cells 2 precursor"
/protein_id="BAH13501.1"
/transl_table=1
/translation="MGSFEDGLAALEIWRSDATMRTHTRGAPSVFFIYLLCFVSAYIT
DENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRAASSHEHIAARLTEAVHTMLSSPL
EYLPPWDPKDYSARWNEIFGNNLGALAMFCVLYPENIEARDMAKDYMERMAAQPSWLV
KDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWGF
QYLHNHQPTNCMALLTGSLVLMNQGYLQEAYLWTKQVLTIMEKSLVLLREVTDGSLYE
GVAYGSYTTRSLFQYMFLVQRHFNINHFGHPWLKQHFAFMYRTILPGFQRTVAIADSN
YNWFYGPESQLVFLDKFVMRNGSGNWLADQIRRNRVVEGPGTPSKGQRWCTLHTEFLW
YDGSLKSVPPPDFGTPTLHYFEDWGVVTYGSALPAEINRSFLSFKSGKLGGRAIYDIV
HRNKYKDWIKGWRNFNAGHEHPDQNSFTFAPNGVPFITEALYGPKYTFFNNVLMFSPA
VSKSCFSPWVGQVTEDCSSKWSKYKHDLAASCQGRVVAAEEKNGVVFIRGEGVGAYNP
QLNLKNVQRNLILLHPQLLLLVDQIHLGEESPLETAASFFHNVDVPFEETVVDGVHGA
FIRQRDGLYKMYWMDDTGYSEKATFASVTYPRGYPYNGTNYVNVTMHLRSPITRAAYL
FIGPSIDVQSFTVHGDSQQLDVFIATSKHAYATYLWTGEATGQSAFAQVIADRHKILF
DRNSAIKSSIVPEVKDYAAIVEQNLQHFKPVFQLLEKQILSRVRNTASFRKTAERLLR
FSDKRQTEEAIDRIFAISQQQQQQSKSKKNRRAGKRYKFVDAVPDIFAQIEVNEKKIR
QKAQILAQKELPIDEDEEMKDLLDFADVTYEKHKNGGLIKGRFGQARMVTTTHSRAPS
LSASYTRLFLILNIAIFFVMLAMQLTYFQRAQSLHGQRCLYAVLLIDSCILLWLYSSC
SQSQC"
BASE COUNT 993 a 751 c 813 g 932 t
ORIGIN
1 aggaattgga tggaggtgcc cttcagaact catggagaaa agcactgctc ccagtaaaat
61 atctctcatt ctaatgaatg ggatctttcg aagatggttt ggctgccttg gagatttgga
121 gatctgatgc cacgatgagg actcacacac ggggggctcc cagtgtgttt ttcatatatt
181 tgctttgctt tgtgtcagcc tacatcaccg acgagaaccc agaagttatg attcccttca
241 ccaatgccaa ctacgacagc catcccatgc tgtacttctc cagggcagaa gtggcggagc
301 tgcagctcag ggctgccagc tcgcacgagc acattgcagc ccgcctcacg gaggctgtgc
361 acacgatgct gtccagcccc ttggaatacc tccctccctg ggatcccaag gactacagtg
421 cccgctggaa tgaaattttt ggaaacaact tgggtgcctt ggcaatgttc tgtgtgctgt
481 atcctgagaa cattgaagcc cgagacatgg ccaaagacta catggagagg atggcagcgc
541 agcctagttg gttggtgaaa gatgctcctt gggatgaggt cccgcttgct cactccctgg
601 ttggttttgc cactgcttat gacttcttgt acaactacct gagcaagaca caacaggaga
661 agtttcttga agtgattgcc aatgcctcag ggtatatgta tgaaacttca tacaggagag
721 gatggggatt tcaatacctg cacaatcatc agcccaccaa ctgtatggct ttgctcacgg
781 gaagcctagt cctgatgaat caaggatatc ttcaagaagc ctacttatgg accaaacaag
841 ttctgaccat catggagaaa tctctggtct tgctcaggga ggtgacggat ggctccctct
901 atgaaggagt tgcgtatggc agctacacca ctagatcact cttccaatac atgtttctcg
961 tccagaggca cttcaacatc aaccactttg gccatccgtg gcttaaacaa cactttgcat
1021 ttatgtatag aaccatcctg ccagggtttc aaaggactgt ggctattgcg gactcaaatt
1081 acaactggtt ttatggtcca gaaagccaat tagtgttcct tgataaattt gtcatgcgta
1141 atggcagtgg taactggcta gctgaccaaa tcagaaggaa ccgtgtggtg gaaggtccag
1201 gaacaccatc caaagggcag cgctggtgca ctctgcacac agaatttctc tggtatgatg
1261 gcagcttgaa atcggttcct cctccagact ttggcacccc tacactgcat tattttgaag
1321 actggggtgt cgtgacttat ggaagtgcac tacctgcaga aatcaataga tctttccttt
1381 ccttcaagtc tggaaaactg gggggacgtg caatatatga cattgtccac agaaacaaat
1441 acaaagattg gatcaaagga tggagaaatt ttaatgcagg gcatgaacat cctgatcaaa
1501 actcatttac ttttgctccc aatggtgtgc ctttcattac tgaggctctg tacgggccaa
1561 agtacacctt cttcaacaat gttttgatgt tttccccagc tgtgtcaaag agctgttttt
1621 ctccctgggt gggtcaggtc acagaagact gctcatcaaa atggtctaaa tacaagcatg
1681 acctggcagc tagttgtcag gggagggtgg ttgcagcaga ggagaaaaat ggggtggttt
1741 tcatccgagg agaaggtgtg ggagcttata acccccagct caacctgaag aatgttcaga
1801 ggaatctcat cctcctacat ccacagctgc ttctccttgt agaccaaata cacctgggag
1861 aggagagtcc cttggagaca gcagcgagct tcttccataa tgtggatgtt ccttttgagg
1921 agactgtggt agatggtgtc catggggctt tcatcaggca gagagatggt ctctataaaa
1981 tgtactggat ggacgatact ggctacagcg agaaagcaac ctttgcctca gtgacatatc
2041 ctcggggcta tccctacaac gggacaaact atgtgaatgt caccatgcac ctccgaagtc
2101 ccatcaccag ggcagcttac ctcttcatag ggccatctat agatgttcag agcttcactg
2161 tccacggaga ctctcagcaa ctggatgtgt tcatagccac cagcaaacat gcctacgcca
2221 catacctgtg gacaggtgag gccacaggac agtctgcctt tgcacaggtc attgctgatc
2281 gtcacaaaat tctgtttgac cggaattcag ccatcaagag cagcattgtc cctgaggtga
2341 aggactatgc tgctattgtg gaacagaact tgcagcattt taaaccagtg tttcagctgc
2401 tggagaagca gatactgtcc cgagtccgga acacagctag ctttaggaag actgctgaac
2461 gcctgctgag attttcagat aagagacaga ctgaggaggc cattgacagg atttttgcca
2521 tatcacagca acagcagcag caaagcaagt caaagaaaaa ccgaagggca ggcaaacgct
2581 ataaatttgt ggatgctgtc cctgatattt ttgcacagat tgaagtcaat gagaaaaaga
2641 ttagacagaa agctcagatt ttggcacaga aagaactacc catagatgaa gatgaagaaa
2701 tgaaagacct tttagatttt gcagatgtaa catacgagaa acataaaaat gggggcttga
2761 ttaaaggccg gtttggacag gcacggatgg tgacaactac acacagcagg gccccatcac
2821 tgtctgcttc ctataccagg ttgttcctga ttctgaacat tgctattttc tttgtcatgt
2881 tggcaatgca actgacttat ttccagaggg cccagagcct acatggccaa agatgtcttt
2941 atgcagttct tctcatagat agctgtattt tattatggtt gtactcttct tgttcccaat
3001 cacagtgtta gcactgaagc tataaattac ctggtcattt tgtgatcaca agagtctatg
3061 caaaaaaaaa aaaatttctt taccccagat tatcagattt ttttccctca gattcatttt
3121 aacaaattaa gggaagatat tttgacacaa gaaagcagga acgtggagaa attggagcag
3181 gaaaagaaat tatcaaagca atagaaatag cttggtggtc ctatggtgtt tttggaagta
3241 tttggcattg ctaattgagc agtccatata gtactacttt tagaagaaac aaaaagtctg
3301 ttttttaaag taatgttttt tcttatgaga aaaaggttta gatagaattg ggttttatta
3361 atattaattt aatgctatta gcaatttcca tatactatat tgtggaaaag actgaagaat
3421 acaattctga gaaataaaaa aaaattttaa tggtatactc atgttgaaag ataaatgttg
3481 ctaagtcct
//