LOCUS AK301346 1950 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58480 complete cds, highly similar to
Protocadherin beta 14 precursor.
ACCESSION AK301346
VERSION AK301346.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1950)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1950
/clone="SYNOV2004571"
/clone_lib="SYNOV2"
/db_xref="H-InvDB:HIT000495970"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="synovial membrane tissue from rheumatoid
arthritis"
CDS 164..1813
/codon_start=1
/note="highly similar to Protocadherin beta 14 precursor"
/protein_id="BAG62894.1"
/transl_table=1
/translation="MEIRGALDLRKRQVLIFLVLLGLSRAGTESAHYSVAEETEIGSF
VANLARDLGLGVEELSSREARVVSDDNKKYLHLDLLTGNLLLNEKLDRDELCGSTEPC
VLHFQVVLENPLQFFRFELCVKDINDHSPTFLDKEILIKISEGTTVGATFLMESAQDL
DVGSNSLQNYTISPNSHFYIKIPDSSDRKIYPELVLDRALDYEQEAELRLTLTAVDGG
SPPKSGTTLVLIKVLDINDNAPEFPQSLYEVQVPEDRPLGSWIATISAKDLDAGNYGK
ISYTFFHASEDIRKTFEINPISGEVNLRSPLDFEVIQSYTINIQATDGGGLSGKCTLL
VKVMDINDNPPEVTISSITKRIPENASETLVALFSILDQDSGDNGRMICSIQDNLPFF
LKPTFKDFFTLVSEKALDRESQAEYNITITVTDLGTPRLKTEYNITVLLSDVNDNAPT
FTQTSYTLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTG
GSGTNEFKFLKPIIPNFQVHDTGRNMGEIENFRNSFGLNIQ"
BASE COUNT 544 a 434 c 450 g 522 t
ORIGIN
1 agaaagcatc caacccactg aaaagacagg cattaaagga gcttcgccta cagagctgct
61 ggaggataca ctctccaggg ggttcctgtt aaaaaccaga gcttcagctt ccaaaattac
121 ggctgagctt cagtttttcc acaagagatt gcctaaagga accatggaga tcagaggggc
181 actcgatctg cgaaaaaggc aagttctaat attccttgtt ttgctgggat tgtctcgggc
241 aggtactgaa tctgcacact attctgtggc agaggaaaca gaaattggct cttttgtggc
301 taatctagcg agggacctag ggctgggggt ggaggagctg tcttcacgtg aagcccgggt
361 agtgtctgat gataataaaa agtatttgca ccttgatttg ctgactggga atttgctcct
421 aaatgagaaa ctagaccgag acgagctgtg tggctccacc gagccctgtg tgctgcattt
481 tcaggtggtt ttggaaaacc ctttacagtt ttttcggttt gagctgtgtg tcaaagacat
541 aaatgatcac tcccctacat ttctagacaa ggaaatactt attaaaatat cagaaggtac
601 cactgttgga gctacctttc taatggagag tgctcaagat ttggatgtcg gaagcaacag
661 tctccaaaac tacacaatta gccccaattc tcacttctac attaaaattc ccgacagtag
721 tgacagaaag atatacccag agctggtcct agatagagct ttagattatg aacaggaagc
781 tgaactcaga ttaacactca cagcagtgga tggtggatcc ccgcccaagt ctgggacaac
841 tttggttctc atcaaggtgt tggacatcaa tgataatgcc cctgagtttc ctcagagtct
901 ctatgaggtg caagtccccg aggacagacc ccttggctcc tggattgcca ccatctcagc
961 taaggatctg gatgcaggaa actatggaaa aatatcttac acatttttcc atgcatcaga
1021 agatattcgt aaaacatttg aaattaatcc aatatctggg gaagttaatt tgagatcacc
1081 cctggatttt gaagtaatac agtcctacac tataaatatt caggcaacag atggtggggg
1141 tctttcagga aaatgcaccc ttctagttaa agttatggat ataaacgaca acccaccaga
1201 agtgaccata tcgtcgatta caaagagaat tccagagaat gcctcagaga ccctagtagc
1261 tctttttagt atcctagacc aagactctgg agacaatggg aggatgattt gctctattca
1321 agataacctc ccttttttcc tgaaaccgac cttcaaggac tttttcactc tagtttctga
1381 aaaagcactg gacagagaga gccaagccga gtacaacatc acgatcaccg tcacagactt
1441 ggggacaccc aggctgaaaa ccgagtacaa cataaccgtg ctgctctctg acgtcaatga
1501 caacgccccc accttcaccc aaacctccta caccctgttc gtggcggtgc ggctgtgcag
1561 gaggagcagg gcggcctcgg tgggtcgctg ctcggtgccc gagggtccct ttccagggca
1621 tctggtggac gtgagcggca ccgggaccct gtcccagagc taccaatacg aggtgtgtct
1681 gacaggaggt tccgggacaa atgagttcaa atttctgaag ccgattatcc ccaattttca
1741 agttcatgac actggtagga atatggggga aatcgagaac tttcgaaata gctttggact
1801 taacattcaa taaaacaatt tattttaaat gtctaatttt tggttattct tggcaagctg
1861 atggtacttt ttgcataatc ttttgtggat tcttggttgt actgtagttg catgcatgat
1921 tatagctctt gtttttctca cagtttcttt
//