LOCUS AK300744 1858 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ54552 complete cds, highly similar to
Heterogeneous nuclear ribonucleoprotein K.
ACCESSION AK300744
VERSION AK300744.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1858)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1858
/cell_line="SK-N-MC"
/cell_type="neuroepithelioma"
/clone="SKNMC2002207"
/clone_lib="SKNMC2"
/db_xref="H-InvDB:HIT000495368"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
CDS 170..1489
/codon_start=1
/note="highly similar to Heterogeneous nuclear
ribonucleoprotein K"
/protein_id="BAG62413.1"
/transl_table=1
/translation="METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVE
LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILK
KIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC
CPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMM
FDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQ
MAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHE
SGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF"
BASE COUNT 514 a 378 c 479 g 487 t
ORIGIN
1 ttttctgtct agctccgacc ggctgaggcg gcgcggcagc ggagggacgg cagtctcgca
61 cggctactgc agcactgggg tgtcagttgt tggtccgacc cagaacgctt cagttgtgct
121 ctgcaaggat atataataac tgattggtgt gcccgtttaa taaaagaata tggaaactga
181 acagccagaa gaaaccttcc ctaacactga aaccaatggt gaatttggta aacgccctgc
241 agaagatatg gaagaggaac aagcatttaa aagatctaga aacactgatg agatggttga
301 attacgcatt ctgcttcaga gcaagaatgc tggggcagtg attggaaaag gaggcaagaa
361 tattaaggct ctccgtacag actacaatgc cagtgtttca gtcccagaca gcagtggccc
421 cgagcgcata ttgagtatca gtgctgatat tgaaacaatt ggagaaattc tgaagaaaat
481 catccctacc ttggaagagt accaacacta taaaggaagt gactttgact gcgagttgag
541 gctgttgatt catcagagtc tagcaggagg aattattggg gtcaaaggtg ctaaaatcaa
601 agaacttcga gagaacactc aaaccaccat caagcttttc caggaatgct gtcctcattc
661 cactgacaga gttgttctta ttggaggaaa acccgatagg gttgtagagt gcataaagat
721 catccttgat cttatatctg agtctcccat caaaggacgt gcacagcctt atgatcccaa
781 tttttacgat gaaacctatg attatggtgg ttttacaatg atgtttgatg accgtcgcgg
841 acgcccagtg ggatttccca tgcggggaag aggtggtttt gacagaatgc ctcctggtcg
901 gggtgggcgt cccatgcctc catctagaag agattatgat gatatgagcc ctcgtcgagg
961 accacctccc cctcctcccg gacgaggcgg ccggggtggt agcagagctc ggaatcttcc
1021 tcttcctcca ccaccaccac ctagaggggg agacctcatg gcctatgaca gaagagggag
1081 acctggagac cgttacgacg gcatggttgg tttcagtgct gatgaaactt gggactctgc
1141 aatagataca tggagcccat cagaatggca gatggcttat gaaccacagg gtggctccgg
1201 atatgattat tcctatgcag ggggtcgtgg ctcatatggt gatcttggtg gacctattat
1261 tactacacaa gtaactattc ccaaagattt ggctggatct attattggca aaggtggtca
1321 gcggattaaa caaatccgtc atgagtcggg agcttcgatc aaaattgatg agcctttaga
1381 aggatccgaa gatcggatca ttaccattac aggaacacag gaccagatac agaatgcaca
1441 gtatttgctg cagaacagtg tgaagcagta ttctggaaag tttttctaag actagtgaag
1501 aactgaagga gtcctgcatc tttttttttt ttatctgctt ctgtttaaaa agccaacatt
1561 cctctgcttc ataggtgttc tgcatttgag gtgtagtgaa atctttgctg ttcaccagat
1621 gtaatgtttt agttccttac aaacagggtt ggggggggga agggcgtgca aaaactaaca
1681 ttgaaatttt gaaacagcag cagagtgagt ggattttatt tttcgttatt gttggtggtt
1741 taaaaaattc cccccatgta attattgtga acaccttgct ttgtggtcac tgtaacattt
1801 ggggggtggg acagggagga aaagtaacaa tagtccacat gtccctggca tctgttca
//