LOCUS AK300564 2489 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ53887 complete cds, highly similar to
Protocadherin-1 precursor.
ACCESSION AK300564
VERSION AK300564.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2489)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2489
/clone="PROST2017288"
/clone_lib="PROST2"
/db_xref="H-InvDB:HIT000495188"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="prostate"
CDS 309..2354
/codon_start=1
/note="highly similar to Protocadherin-1 precursor"
/protein_id="BAG62270.1"
/transl_table=1
/translation="MNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRD
EGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDS
GNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVIAEITASDADSGSNA
ELVYSLEPEPAAKGLFTISPETGEIQVKTSLDREQRESYELKVVAADRGSPSLQGTAT
VLVNVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENAQVQLSVEQDN
GDFVIQNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAP
YITAPSNTSHKLLTPQTRLGETVSQVAAEDFDSGVNAELIYSIAGGNPYGLFQIGSHS
GAITLEKEIERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHS
LDTPLDIDIAGDPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQ
AGKKETKDLYAPKPSGKASKGNKSKGKKIKSPKPVKPVEDEDEAGLQKSLKFNLMSDA
PGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTF
VGTGDTTSTGSEQYSDYSYRANPPKYPSKQVGQPFQLSTPQPLPHPYHGAIWTEVWE"
BASE COUNT 578 a 730 c 708 g 473 t
ORIGIN
1 catccaggtg agaggccccc tccgtataac tgtcagggtg acccaccact agaaatggga
61 gcccacccaa ccaggtgaag gccaatgact cagaccaagg tgccaatgca gaaatcgaat
121 acacattcca ccaggcgccc gaagttgtga ggcgtcttct tcgactggac aggaacactg
181 gacttatcac tgttcagggc ccggtggacc gtgaggacct aagcaccctg cgcttctcag
241 tgcttgctaa ggaccgaggc accaacccca agagtgcccg tgcccaggtg gttgtgaccg
301 tgaaggacat gaatgacaat gcccccacca ttgagatccg gggcataggg ctagtgactc
361 atcaagatgg gatggctaac atctcagagg atgtggcaga ggagacagct gtggccctgg
421 tgcaggtgtc tgaccgagat gagggagaga atgcagctgt cacctgtgtg gtggcaggtg
481 atgtgccctt ccagctgcgc caggccagtg agacaggcag tgacagcaag aagaagtatt
541 tcctgcagac taccaccccg ctagactacg agaaggtcaa agactacacc attgagattg
601 tggctgtgga ctctggcaac cccccactct ccagcactaa ctccctcaag gtgcaggtgg
661 tggacgtcaa tgacaacgca cctgtcttca ctcagagtgt cactgaggtc gccttcccgg
721 aaaacaacaa gcctggtgaa gtgattgctg agatcactgc cagtgatgct gactctggct
781 ctaatgctga gctggtttac tctctggagc ctgagccggc tgctaagggc ctcttcacca
841 tctcacccga gactggagag atccaggtga agacatctct ggatcgggaa cagcgggaga
901 gctatgagtt gaaggtggtg gcagctgacc ggggcagtcc tagcctccag ggcacagcca
961 ctgtccttgt caatgtgctg gactgcaatg acaatgaccc caaatttatg ctgagtggct
1021 acaacttctc agtgatggag aacatgccag cactgagtcc agtgggcatg gtgactgtca
1081 ttgatggaga caagggggag aatgcccagg tgcagctctc agtggagcag gacaacggtg
1141 actttgttat ccagaatggc acaggcacca tcctatccag cctgagcttt gatcgagagc
1201 aacaaagcac ctacaccttc cagctgaagg cagtggatgg tggcgtccca cctcgctcag
1261 cttacgttgg tgtcaccatc aatgtgctgg acgagaatga caacgcaccc tatatcactg
1321 ccccttctaa cacctctcac aagctgctga ccccccagac acgtcttggt gagacggtca
1381 gccaggtggc agccgaggac tttgactctg gtgtcaatgc tgagctgatc tacagcattg
1441 caggtggcaa cccttatgga ctcttccaga ttgggtcaca ttcaggtgcc atcaccctgg
1501 agaaggagat tgagcggcgc caccatgggc tacaccgcct ggtggtgaag gtcagtgacc
1561 gcggcaagcc cccacgctat ggcacagcct tggtccatct ttatgtcaat gagactctgg
1621 ccaaccgcac gctgctggag accctcctgg gccacagcct ggacacgccg ctggatattg
1681 acattgctgg ggatccagaa tatgagcgct ccaagcagcg tggcaacatt ctctttggtg
1741 tggtggctgg tgtggtggcc gtggccttgc tcatcgccct ggcggttctt gtgcgctact
1801 gcagacagcg ggaggccaaa agtggttacc aggctggtaa gaaggagacc aaggacctgt
1861 atgcccccaa gcccagtggc aaggcctcca agggaaacaa aagcaaaggc aagaagatca
1921 agtccccaaa gcccgtgaag ccagtggagg acgaggatga ggccgggctg cagaagtccc
1981 tcaagttcaa cctgatgagc gatgcccctg gggacagtcc ccgcatccac ctgcccctca
2041 actacccacc aggcagccct gacctgggcc gccactatcg ctctaactcc ccactgcctt
2101 ccatccagct gcagccccag tcaccctcag cctccaagaa gcaccaggtg gtacaggacc
2161 tgccacctgc aaacacattc gtgggcaccg gggacaccac gtccacgggc tctgagcagt
2221 actccgacta cagctaccgc gccaaccccc ccaaataccc cagcaagcag gtaggccagc
2281 cctttcagct cagcacaccc cagcccctac cccaccccta ccacggagcc atctggaccg
2341 aggtgtggga gtgatggagc aggtttactg tgcctgcccg tgttgggggc cagcctgagc
2401 cagcagtggg aggtggggcc ttagtgcctc accgggcaca cggattaggc tgagtgaaga
2461 ttaagggagg gtgtgctctg tggtctcct
//