LOCUS AK300564 2489 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ53887 complete cds, highly similar to Protocadherin-1 precursor. ACCESSION AK300564 VERSION AK300564.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2489) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..2489 /clone="PROST2017288" /clone_lib="PROST2" /db_xref="H-InvDB:HIT000495188" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="prostate" CDS 309..2354 /codon_start=1 /note="highly similar to Protocadherin-1 precursor" /protein_id="BAG62270.1" /transl_table=1 /translation="MNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRD EGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDS GNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVIAEITASDADSGSNA ELVYSLEPEPAAKGLFTISPETGEIQVKTSLDREQRESYELKVVAADRGSPSLQGTAT VLVNVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENAQVQLSVEQDN GDFVIQNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAP YITAPSNTSHKLLTPQTRLGETVSQVAAEDFDSGVNAELIYSIAGGNPYGLFQIGSHS GAITLEKEIERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHS LDTPLDIDIAGDPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQ AGKKETKDLYAPKPSGKASKGNKSKGKKIKSPKPVKPVEDEDEAGLQKSLKFNLMSDA PGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTF VGTGDTTSTGSEQYSDYSYRANPPKYPSKQVGQPFQLSTPQPLPHPYHGAIWTEVWE" BASE COUNT 578 a 730 c 708 g 473 t ORIGIN 1 catccaggtg agaggccccc tccgtataac tgtcagggtg acccaccact agaaatggga 61 gcccacccaa ccaggtgaag gccaatgact cagaccaagg tgccaatgca gaaatcgaat 121 acacattcca ccaggcgccc gaagttgtga ggcgtcttct tcgactggac aggaacactg 181 gacttatcac tgttcagggc ccggtggacc gtgaggacct aagcaccctg cgcttctcag 241 tgcttgctaa ggaccgaggc accaacccca agagtgcccg tgcccaggtg gttgtgaccg 301 tgaaggacat gaatgacaat gcccccacca ttgagatccg gggcataggg ctagtgactc 361 atcaagatgg gatggctaac atctcagagg atgtggcaga ggagacagct gtggccctgg 421 tgcaggtgtc tgaccgagat gagggagaga atgcagctgt cacctgtgtg gtggcaggtg 481 atgtgccctt ccagctgcgc caggccagtg agacaggcag tgacagcaag aagaagtatt 541 tcctgcagac taccaccccg ctagactacg agaaggtcaa agactacacc attgagattg 601 tggctgtgga ctctggcaac cccccactct ccagcactaa ctccctcaag gtgcaggtgg 661 tggacgtcaa tgacaacgca cctgtcttca ctcagagtgt cactgaggtc gccttcccgg 721 aaaacaacaa gcctggtgaa gtgattgctg agatcactgc cagtgatgct gactctggct 781 ctaatgctga gctggtttac tctctggagc ctgagccggc tgctaagggc ctcttcacca 841 tctcacccga gactggagag atccaggtga agacatctct ggatcgggaa cagcgggaga 901 gctatgagtt gaaggtggtg gcagctgacc ggggcagtcc tagcctccag ggcacagcca 961 ctgtccttgt caatgtgctg gactgcaatg acaatgaccc caaatttatg ctgagtggct 1021 acaacttctc agtgatggag aacatgccag cactgagtcc agtgggcatg gtgactgtca 1081 ttgatggaga caagggggag aatgcccagg tgcagctctc agtggagcag gacaacggtg 1141 actttgttat ccagaatggc acaggcacca tcctatccag cctgagcttt gatcgagagc 1201 aacaaagcac ctacaccttc cagctgaagg cagtggatgg tggcgtccca cctcgctcag 1261 cttacgttgg tgtcaccatc aatgtgctgg acgagaatga caacgcaccc tatatcactg 1321 ccccttctaa cacctctcac aagctgctga ccccccagac acgtcttggt gagacggtca 1381 gccaggtggc agccgaggac tttgactctg gtgtcaatgc tgagctgatc tacagcattg 1441 caggtggcaa cccttatgga ctcttccaga ttgggtcaca ttcaggtgcc atcaccctgg 1501 agaaggagat tgagcggcgc caccatgggc tacaccgcct ggtggtgaag gtcagtgacc 1561 gcggcaagcc cccacgctat ggcacagcct tggtccatct ttatgtcaat gagactctgg 1621 ccaaccgcac gctgctggag accctcctgg gccacagcct ggacacgccg ctggatattg 1681 acattgctgg ggatccagaa tatgagcgct ccaagcagcg tggcaacatt ctctttggtg 1741 tggtggctgg tgtggtggcc gtggccttgc tcatcgccct ggcggttctt gtgcgctact 1801 gcagacagcg ggaggccaaa agtggttacc aggctggtaa gaaggagacc aaggacctgt 1861 atgcccccaa gcccagtggc aaggcctcca agggaaacaa aagcaaaggc aagaagatca 1921 agtccccaaa gcccgtgaag ccagtggagg acgaggatga ggccgggctg cagaagtccc 1981 tcaagttcaa cctgatgagc gatgcccctg gggacagtcc ccgcatccac ctgcccctca 2041 actacccacc aggcagccct gacctgggcc gccactatcg ctctaactcc ccactgcctt 2101 ccatccagct gcagccccag tcaccctcag cctccaagaa gcaccaggtg gtacaggacc 2161 tgccacctgc aaacacattc gtgggcaccg gggacaccac gtccacgggc tctgagcagt 2221 actccgacta cagctaccgc gccaaccccc ccaaataccc cagcaagcag gtaggccagc 2281 cctttcagct cagcacaccc cagcccctac cccaccccta ccacggagcc atctggaccg 2341 aggtgtggga gtgatggagc aggtttactg tgcctgcccg tgttgggggc cagcctgagc 2401 cagcagtggg aggtggggcc ttagtgcctc accgggcaca cggattaggc tgagtgaaga 2461 ttaagggagg gtgtgctctg tggtctcct //