LOCUS AK300363 3467 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ61710 complete cds, highly similar to DNA
ligase 3 (EC 6.5.1.1).
ACCESSION AK300363
VERSION AK300363.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3467)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3467
/clone="PLACE7009090"
/clone_lib="PLACE7"
/db_xref="H-InvDB:HIT000494987"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="placenta"
CDS 903..3119
/codon_start=1
/note="highly similar to DNA ligase 3 (EC 6.5.1.1)"
/protein_id="BAH13269.1"
/transl_table=1
/translation="MVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVI
KTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLT
IQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD
ALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEAC
KSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQ
AFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSL
MDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVK
GTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQ
KWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKA
AVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKAD
FTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQ
TAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFS
RLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRKRRLVAPC"
BASE COUNT 904 a 873 c 920 g 770 t
ORIGIN
1 aaagagacag gcgctccaac cgtcgtgggc tgcccgcagc ctgtaatgag caagttccga
61 ggcctacggt gagcgccgga gccggagagg cagctatatg tctttggctt tcaagatctt
121 ctttccacaa accctccgtg cactcagccg aaaagaactg tgcctattcc gaaaacatca
181 ctggcgtgat gtaagacaat tcagccagtg gtcagaaaca gatctgcttc atggacatcc
241 cctcttcctg agaagaaagc ctgttctatc attccaggga agccatctaa gatcacgtgc
301 cacctacctt gttttcttgc cagggttgca tgtgggactc tgcagtggcc cctgtgagat
361 ggctgagcaa cggttctgtg tggactatgc caagcgtggc acagctggct gcaaaaaatg
421 caaggaaaag attgtgaagg gcgtatgccg aattggcaaa gtggtgccca atcccttctc
481 agagtctggg ggtgatatga aagagtggta ccacattaaa tgcatgtttg aggaactaga
541 gcgggcccgg gccaccacaa aaaaaatcga ggacctcaca gagctggaag gctggaaaga
601 gctggaagat aatgagaagg aacagataac ccagcacatt gcagatctgt cttctaaggc
661 agcaggtaca ccaaagaaga aagctgttgt ccaggctaag ttgacaacca ctggccaggt
721 gacttctcca gtgaaaggcg cctcatttgt caccagtacc aatccccgga aattttctgg
781 cttttcagcc aagcccaaca actctgggga agccccctcg agccccaccc ctaagagaag
841 tctgtcttca agcaaatgtg accccaggca taaggactgt ctgctacggg agtttcgaaa
901 gcatggtggc cgataatcct agctacaaca cgaagaccca gatcatccag gacttccttc
961 ggaaaggctc agcaggagat ggtttccacg gtgatgtgta cctaacagtg aagctgctgc
1021 tgccaggagt cattaagact gtttacaact tgaacgataa gcagattgtg aagcttttca
1081 gtcgcatttt taactgcaac ccagatgata tggcacggga cctagagcag ggtgacgtgt
1141 cagagacaat cagagtcttc tttgagcaga gcaagtcttt ccccccagct gccaagagcc
1201 tccttaccat ccaggaagtg gatgagttcc ttctgcggct gtccaagctc accaaggagg
1261 atgagcagca acaggcccta caggacattg cctccaggtg tacagccaat gaccttaaat
1321 gcatcatcag gttgatcaaa catgatctga agatgaactc aggtgcaaaa catgtgttag
1381 acgcccttga ccccaatgcc tatgaagcct tcaaagcctc gcgcaacctg caggatgtgg
1441 tggagcgggt ccttcacaac gcgcaggagg tggagaagga gccgggccag agacgagctc
1501 tgagcgtcca ggcctcgctg atgacacctg tgcagcccat gttggcggag gcctgcaagt
1561 ccgttgagta tgcaatgaag aaatgtccca atggcatgtt ctctgagatc aagtacgatg
1621 gagagcgagt ccaggtgcat aagaatggag accacttcag ctacttcagc cgcagtctca
1681 agcccgtcct tcctcacaag gtggcccact ttaaggacta cattccccag gcttttcctg
1741 ggggccacag catgatcttg gattctgaag tgcttctgat tgacaacaag acaggcaaac
1801 cactgccctt tgggactctg ggagtacaca agaaagcagc cttccaggat gctaatgtct
1861 gcctgtttgt ttttgattgt atctacttta atgatgtcag cttgatggac agacctctgt
1921 gtgagcggcg gaagtttctt catgacaaca tggttgaaat tccaaaccgg atcatgttct
1981 cagaaatgaa gcgagtcaca aaagctttgg acttggctga catgataacc cgggtgatcc
2041 aggagggatt ggaggggctg gtgctgaagg atgtgaaggg tacatatgag cctgggaagc
2101 ggcactggct gaaagtgaag aaagactatt tgaacgaggg ggccatggcc gacacagctg
2161 acctggtggt ccttggagcc ttctatgggc aagggagcaa aggcggcatg atgtcaatct
2221 tcctcatggg ctgctacgac cctggcagcc agaagtggtg cacagtcacc aagtgtgcag
2281 gaggccatga tgatgccacg cttgcccgcc tgcagaatga actagacatg gtgaagatca
2341 gcaaggaccc cagcaaaata cccagctggt tgaaggtcaa caagatctac tatcctgact
2401 tcatcgtccc agacccaaag aaagctgccg tgtgggagat cacaggggct gaattctcca
2461 aatcggaggc tcatacagct gacgggatct ccatccgatt ccctcgctgc acccgaatcc
2521 gagatgataa ggactggaaa tctgccacta accttcccca actcaaggaa ctgtaccagt
2581 tgtccaagga gaaggcagac ttcactgtag tggctggaga tgaggggagc tccactacag
2641 ggggtagcag tgaagagaat aagggtccct cagggtctgc tgtgtcccgc aaggccccca
2701 gcaagccctc agccagtacc aagaaagcag aagggaagct gagtaactcc aacagcaaag
2761 atggcaacat gcagactgca aagccttccg ctatgaaggt gggggagaag ctggccacaa
2821 agtcttctcc agtgaaagta ggggagaagc ggaaagctgc tgatgagacg ctgtgccaaa
2881 caaaggtatt gctggacatc ttcactgggg tgcggcttta cttgccaccc tccacaccag
2941 acttcagccg tctcagacgc tactttgtgg cattcgacgg ggacctggta caggaatttg
3001 atatgacttc agccacgcac gtgctgggta gcagggacaa gaaccctgcg gcccagcagg
3061 tctccccaga gtggatttgg gcatgtatcc ggaaacggag actggtagct ccctgctagg
3121 tttgctgtct tccctctccc tcaggccata ctctccttta ccatactatt ggactggact
3181 caggctggag gcagatagac acagtatagg gggaatgggc ttgcttctcc caaacccacc
3241 agttctccac tgtctcttct ggaccaggaa ttagttgctg tgggtgccac agctgaagtc
3301 agtttgtctt gctggtttaa atagatcttt cagagctggg tgctgggttt gccatctttt
3361 tgttttcttt gaaaagcagc ttagttaccc tttttataaa taaaatatct tgcagttatc
3421 tttgtccttt ccccacctac acccccaata atttccctag agattaa
//