LOCUS AK300163 1980 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ50209 complete cds, highly similar to
DNA-repair protein XRCC1.
ACCESSION AK300163
VERSION AK300163.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1980)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1980
/clone="PLACE6005072"
/clone_lib="PLACE6"
/db_xref="H-InvDB:HIT000494787"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="placenta"
CDS 106..1914
/codon_start=1
/note="highly similar to DNA-repair protein XRCC1"
/protein_id="BAG61945.1"
/transl_table=1
/translation="MPEIRLRHVVSCSSQDSLEKEEQIHSVDIGNDGSAFVEVLVGSS
AGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVKIVCS
QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVSKLGQFRVKEEDESANSLRPGALF
FSRINKTSPVTASDPAGPSYAAATLQASSAASSASPVSRAIGSTSKPQESPKGKRKLD
LNQEEKKTPSKPPAQLSPSVPKRPKLPAPTHTPATAPVPARAQGAVTGKPRGEGTEPR
RPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFA
NTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGPGSSSEEDEASHSGGSGD
EAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAASPVLQEDIDIEGVQSEGQDNG
AEDSGDTEDELRRVAEQKEHRLPPGQEENGEDPYAGSTDENTDSEEHQEPPDLPVPEL
PDFFQGKHFFPYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEA
LMDNPSLAFDRPRWIYSCNEKQKLLPHQLYGVVPQA"
BASE COUNT 466 a 606 c 567 g 341 t
ORIGIN
1 actttagcca gcgcagggcg caccccgctc cctcccactc tccctgcccc tcggacccca
61 tactctacct catccttctg gccaggcgaa gcccacgacg ttgacatgcc ggagatccgc
121 ctccgccatg tcgtgtcctg cagcagccag gactcgttgg agaaggagga gcagatacac
181 agtgtggaca ttgggaatga tggctcagct ttcgtggagg tgctggtggg cagttcagct
241 ggaggcgctg gggagcaaga ctatgaggtc cttctggtca cctcatcttt catgtcccct
301 tccgagagcc gcagtggctc aaaccccaac cgcgttcgca tgtttgggcc tgacaagctg
361 gtccgggcag ccgccgagaa gcgctgggac cgggtcaaaa ttgtttgcag ccagccctac
421 agcaaggact ccccctttgg cttgagtttt gtacggtttc atagcccccc agacaaagat
481 gaggcagagg ccccgtccca gaaggtgaca gtgtccaagc ttggccagtt ccgtgtgaag
541 gaggaggatg agagcgccaa ctctctgagg ccgggggctc tcttcttcag ccggatcaac
601 aagacatccc cagtcacagc cagcgaccca gcaggaccta gctatgcagc tgctaccctc
661 caggcttcta gtgctgcctc ctcagcctct ccagtctcca gggccatagg cagcacctcc
721 aagccccagg agtctcccaa agggaagagg aagttggatt tgaaccaaga agaaaagaag
781 acccccagca aaccaccagc ccagctgtcg ccatctgttc ccaagagacc taaattgcca
841 gctccaactc ataccccagc cacagcccca gtccctgccc gagcacaggg ggcagtgaca
901 ggcaaacccc gaggagaagg caccgagccc agacgacccc gagctggccc agaggagctg
961 gggaagatcc ttcagggtgt ggtagtggtg ctgagtggct tccagaaccc cttccgctcc
1021 gagctgcgag ataaggccct agagcttggg gccaagtatc ggccagactg gacccgggac
1081 agcacgcacc tcatctgtgc ctttgccaac acccccaagt acagccaggt cctaggcctg
1141 ggaggccgca tcgtgcgtaa ggagtgggtg ctggactgtc accgcatgcg tcggcggctg
1201 ccctcccgga ggtacctcat ggcagggcca ggttccagca gtgaggagga tgaggcctct
1261 cacagcggtg gcagcggaga tgaagccccc aagcttcctc agaagcaacc ccagaccaaa
1321 accaagccca ctcaggcagc tggacccagc tcaccccaga agcccccaac ccctgaagag
1381 accaaagcag cctcaccagt gctccaggaa gatatagaca ttgagggggt acagtcagaa
1441 ggacaggaca atggggcgga agattctggg gacacagagg atgagctgag gagggtggca
1501 gagcagaagg aacacagact gccccctggc caggaggaga atggggaaga cccgtatgca
1561 ggctccacgg atgagaacac ggacagtgag gaacaccagg agcctcctga tctgccagtc
1621 cctgagctcc cagatttctt ccagggcaag cacttctttc cttacgggga gttccctggg
1681 gacgagcggc ggaaactcat ccgatacgtc acagccttca atggggagct cgaggactat
1741 atgagtgacc gggttcagtt tgtgatcaca gcacaggaat gggatcccag ctttgaggag
1801 gccctgatgg acaacccctc cctggcattc gatcgtcccc gatggatcta cagttgcaat
1861 gagaagcaga agttacttcc tcaccagctc tatggggtgg tgccgcaggc ctgaagtatg
1921 tgctatacac acacacacac acacacacac gatgcattta ataaagatga gttggttctc
//