LOCUS AK300067 1588 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ50203 complete cds, highly similar to
Syndecan-2 precursor.
ACCESSION AK300067
VERSION AK300067.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1588)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1588
/clone="PERIC2001711"
/clone_lib="PERIC2"
/db_xref="H-InvDB:HIT000494691"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="pericardium"
CDS 717..962
/codon_start=1
/note="highly similar to Syndecan-2 precursor"
/protein_id="BAG61873.1"
/transl_table=1
/translation="MDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLI
LLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA"
BASE COUNT 418 a 365 c 376 g 429 t
ORIGIN
1 tggagatacc cccggagctc cagccgcgcg gatcgcgcgc tcccgccgct ctgcccctaa
61 acttctgccg tagctccctt tcaagccagc gaatttattc cttaaaacca gaaactgaac
121 ctcggcacgg gaaaggagtc cgcggaggag caaaaccaca gcagagcaag aagagcttca
181 gagagcagcc ttcccggagc accaactccg tgtcgggagt gcagaaacca acaagtgaga
241 gggcgccgcg ttcccggggc gcagctgcgg gcggcgggag caggcgcagg aggaggaagc
301 gagcgcctcc gagccccgag cccgagtccc cgagcgtgag ccgcaatcgc tgcggtactc
361 tgctccggat tcgtgtgcgc gggctgcgcc gagcgctggg caggaggctt cgttttgccc
421 tggttgcaag cagcggctgg gagcagccgg tccctgggga atatgcggcg cgcgtggatc
481 ctgctcacct tgggcttggt ggcctgcgtg tcggcggagt cgagagcaga gctgatgagg
541 atgtagagag tccagagctg acaacatctc gaccacttcc aaagatactg ttgactagtg
601 ctgctccaaa agtggaaacc acgacgctga atatacagaa caagatacct gctcagacaa
661 agtcacctga agaaactgat aaagagaaag ttcacctctc tgactcagaa aggaaaatgg
721 acccagccga agaggataca aatgtgtata ctgagaaaca ctcagacagt ctgtttaaac
781 ggacagaagt cctagcagct gtcattgctg gtggagttat tggctttctc tttgcaattt
841 ttcttatcct gctgttggtg tatcgcatga gaaagaagga tgaaggaagc tatgaccttg
901 gagaacgcaa accatccagt gctgcttatc agaaggcacc tactaaggag ttttatgcgt
961 aaaactccaa cttagtgtct ctatttatga gatcactgaa cttttcaaaa taaagctttt
1021 gcatagaata atgaagatct ttgttttttg ttttcattaa agagccattc tggcacttta
1081 atgataaaat cccattgtat ttaaaacatt tcatgtattt ctttagaaca acataaaatt
1141 aaaatttaac atctgcagtg ttctgtgaat agcagtggca aaatattatg ttatgaaaac
1201 cctcgatgtt catggaattg gtttaaactt ttatgcgcaa atacaaaatg attgtctttt
1261 tcctatgact caaagatgaa agctgtttca tttgtgtcag catgtctcag attgacctta
1321 ccaagttggt cttactttgt taatttatct gttgtcccct tcctctcctc tgccctccct
1381 tcttgtgccc ttaaaaccaa accctatgcc ttttgtagct gtcatggtgc aatttgtctt
1441 tggaaaattc agataatggt aatttagtgt atatgtgatt ttcaaatatg taaactttaa
1501 cttccacttt gtataaattt ttaagtgtca gactatccat tttacacttg ctttattttt
1561 cattacctgt agctttgggc agatttgc
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