LOCUS AK299906 5119 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58078 complete cds, highly similar to
Tyrosine-protein phosphatase non-receptortype 23 (EC 3.1.3.48).
ACCESSION AK299906
VERSION AK299906.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5119)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..5119
/clone="OCBBF3024363"
/clone_lib="OCBBF3"
/db_xref="H-InvDB:HIT000494530"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 337..4869
/codon_start=1
/note="highly similar to Tyrosine-protein phosphatase
non-receptortype 23 (EC 3.1.3.48)"
/protein_id="BAG61747.1"
/transl_table=1
/translation="MLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMS
RQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTAS
LLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKL
AKGQPDTVQDALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPV
NPTDPAVTGPDIFAKLVPMAAHEASSLYSEEKAKLLREMMAKIEDKNEVLDQFMDSMQ
LDPETVDNLDAYSHIPPQLMEKCAALSVRPDTVRNLVQSMQVLSGVFTDVEASLKDIR
DLLEEDELLEQKFQEAVGQAGAISITSKAELAEVRREWAKYMEVHEKASFTNSELHRA
MNLHVGNLRLLSGPLDQVRAALPTPALSPEDKAVLQNLKRILAKVQEMRDQRVSLEQQ
LRELIQKDDITASLVTTDHSEMKKLFEEQLKKYDQLKVYLEQNLAAQDRVLCALTEAN
VQYAAVRRVLSDLDQKWNSTLQTLVASYEAYEDLMKKSQEGRDFYADLESKVAALLER
TQSTCQAREAARQQLLDRELKKKPPPRPTAPKPLLPRREESEAVEAGDPPEELRSLPP
DMVAGPRLPDTFLGSATPLHFPPSPFPSSTGPGPHYLSGPLPPGTYSGPTQLIQPRAP
GPHAMPVAPGPALYPAPAYTPELGLVPRSSPQHGVVSSPYVGVGPAPPVAGLPSAPPP
QFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPLPTPYTY
PAGAKQPIPAQHHFSSGIPAGFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPH
LFPPQAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPG
PPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVP
PRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGRRPQA
LRLIERDPYEHPERLRQLQQELEAFRGQLGDVGALDTVWRELQDAQEHDARGRSIAIA
RCYSLKNRHQDVMPYDSNRVVLRSGKDDYINASCVEGLSPYCPPLVATQAPLPGTAAD
FWLMVHEQKVSVIVMLVSEAEMEKQKVARYFPTERGQPMVHGALSLALSSVRSTETHV
ERVLSLQFRDQSLKRSLVHLHFPTWPELGLPDSPSNLLRFIQEVHAHYLHQRPLHTPI
IVHCSSGVGRTGAFALLYAAVQEVEAGNGIPELPQLVRRMRQQRKHMLQEKLHLRFCY
EAVVRHVEQVLQRHGVPPPCKPLASASISQKNHLPQDSQDLVLGGDVPISSIQATIAK
LSIRPPGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEP
PVPEAPSSGPPSSSLELLASLTPEAFSLDSSLRGKQRMSKHNFLQAHNGQGLRATRPS
DDPLSLLDPLWTLNKT"
BASE COUNT 1025 a 1765 c 1414 g 915 t
ORIGIN
1 acgaaggggc ggggctgggc tcgtggctga gccagcagct gcagcagcta cgggagtggc
61 cgggtggccg gcgggtgcca gccgccatgg aggccgtgcc ccgcatgccc atgatctggc
121 tggacctgaa ggaggccggt gactttcact tccagccagc tgtgaagaag tttgtcctga
181 agaattatgg agagaaccca gaagcctaca atgaagaact gaagaagctg gagttgctca
241 gacaggacag agatcttctc aggcaagtct gtggcccatg aggacatcaa gtacgagcag
301 gcctgtattc tctacaacct tggagcgctg cactccatgc tgggggccat ggacaagcgg
361 gtgtctgagg agggcatgaa ggtctcctgt acccatttcc agtgcgcagc cggcgccttc
421 gcctacctac gggagcactt ccctcaagcc tacagcgtcg acatgagccg ccagatcctt
481 acgctcaacg tcaacctcat gctgggccag gctcaggagt gcctcctgga gaagtcgatg
541 ttggacaaca ggaagagctt tctggtggcc cgcatcagtg cacaggtggt agattactac
601 aaggaggcat gccgggcctt ggagaacccc gacactgcct cactgctggg ccggatccag
661 aaggactgga agaaacttgt gcagatgaag atctactact tcgcagccgt ggctcatctg
721 cacatgggaa agcaggccga ggagcagcag aagttcgggg agcgggttgc atacttccag
781 agcgccctgg acaagctcaa tgaagccatc aagttggcca agggccagcc tgacactgtg
841 caagacgcgc ttcgcttcac tatggatgtc attgggggaa agtacaattc tgccaagaag
901 gacaacgact tcatttacca tgaggctgtc ccagcattgg acacccttca gcctgtaaaa
961 ggagccccct tggtgaagcc cttgccagtg aaccccacag acccagctgt tacaggccct
1021 gacatctttg ccaaactggt acccatggct gcccacgagg cctcgtcact gtacagtgag
1081 gagaaggcca agctgctccg ggagatgatg gccaagattg aggacaagaa tgaggtcctg
1141 gaccagttca tggattcaat gcagttggat cccgagacgg tggacaacct tgatgcctac
1201 agccacatcc caccccagct catggagaag tgcgcggctc tcagcgtccg gcccgacact
1261 gtcaggaacc ttgtacagtc catgcaagtg ctgtcaggtg tgttcacgga tgtggaggct
1321 tccctgaagg acatcagaga tctgttggag gaggatgagc tgctagagca gaagtttcag
1381 gaggcggtgg gccaggcagg ggccatctcc atcacctcca aggctgagct ggcagaggtg
1441 aggcgagaat gggccaagta catggaagtc catgagaagg cctccttcac caacagtgag
1501 ctgcaccgtg ccatgaacct gcacgtcggc aacctgcgcc tgctcagcgg gccgcttgac
1561 caggtccggg ctgccctgcc cacaccggcc ctctccccag aggacaaggc cgtgctgcaa
1621 aacctaaagc gcatcctggc taaggtgcag gagatgcggg accagcgcgt gtccctggag
1681 cagcagctgc gtgagcttat ccagaaagat gacatcactg cctcgctggt caccacagac
1741 cactcagaga tgaagaagtt gttcgaggag cagctgaaaa agtatgacca gctgaaggtg
1801 tacctggagc agaacctggc cgcccaggac cgtgtcctct gtgcactgac agaggccaac
1861 gtgcagtacg cagccgtgcg gcgggtactc agcgacttgg accaaaagtg gaactccacg
1921 ctgcagaccc tggtggcctc gtatgaagcc tatgaggacc tgatgaagaa gtcgcaggag
1981 ggcagggact tctacgcaga tctggagagc aaggtggctg ctctgctgga gcgcacgcag
2041 tccacctgcc aggcccgcga ggctgcccgc cagcagctcc tggacaggga gctgaagaag
2101 aagccgccgc cacggcccac agccccaaag ccgctgctgc cccgcaggga ggagagtgag
2161 gcagtggaag caggagaccc ccctgaggag ctgcgcagcc tcccccctga catggtggct
2221 ggcccacgac tgcctgacac cttcctggga agtgccaccc cgctccactt tcctcccagc
2281 cccttcccca gctccacagg cccaggaccc cactatctct caggcccctt gccccctggt
2341 acctactcgg gccccaccca gctgatacag cccagggccc cagggcccca tgcaatgccc
2401 gtagcacctg ggcctgccct ctacccagcc cctgcctaca caccggagct gggccttgtg
2461 ccccgatcct ccccacagca tggcgtggtg agcagtccct atgtgggggt agggccggcc
2521 ccaccagttg caggtctccc ctcggcccca cctcctcaat tctcaggccc cgagttggcc
2581 atggcggttc ggccagccac caccacagta gatagcatcc aggcgcccat ccccagccac
2641 acagccccac ggccaaaccc cacccctgct cctcccccgc cctgcttccc tgtgccccca
2701 ccgcagccac tgcccacgcc ttacacctac cctgcagggg ctaagcaacc catcccagca
2761 cagcaccact tctcttctgg gatccccgca ggttttccag ccccaaggat tgggccccag
2821 ccccagcccc atcctcagcc ccatccttca caagcgtttg ggcctcagcc cccacagcag
2881 ccccttccac tccagcatcc acatctcttc ccaccccagg ccccaggact cctaccccca
2941 caatccccct acccctatgc ccctcagcct ggggtcctgg ggcagccgcc acccccccta
3001 cacacccagc tctacccagg tcccgctcaa gaccctctgc cagcccactc aggggctctg
3061 cctttcccca gccctgggcc ccctcagcct ccccatcccc cactggcata tggtcctgcc
3121 ccttctacca gacccatggg cccccaggca gcccctctta ccattcgagg gccctcgtct
3181 gctggccagt ccacccctag tccccacctg gtgccttcac ctgccccatc tccagggcct
3241 ggtccggtac cccctcgccc cccagcagca gaaccacccc cttgcctgcg ccgaggcgcc
3301 gcagctgcag acctgctctc ctccagcccg gagagccagc atggcggcac tcagtctcct
3361 gggggtgggc agcccctgct gcagcccacc aaggtggatg cagctgaggg tcgtcggccg
3421 caggccctgc ggctgattga gcgggacccc tatgaacatc ctgagaggct gcggcagttg
3481 cagcaggagc tggaggcctt tcggggtcag ctgggggatg tgggagctct ggacactgtc
3541 tggcgagagc tgcaagatgc gcaggaacat gatgcccgag gccgttccat cgccattgcc
3601 cgctgctact cactgaagaa ccggcaccag gatgtcatgc cctatgacag taaccgtgtg
3661 gtgctgcgct caggcaagga tgactacatc aatgccagct gcgtggaggg gctctcccca
3721 tactgccccc cgctagtggc aacccaggcc ccactgcctg gcacagctgc tgacttctgg
3781 ctcatggtcc atgagcagaa agtgtcagtc attgtcatgc tggtttctga ggctgagatg
3841 gagaagcaaa aagtggcacg ctacttcccc accgagaggg gccagcccat ggtgcacggt
3901 gccctgagcc tggcattgag cagcgtccgc agcaccgaaa cccatgtgga gcgcgtgctg
3961 agcctgcagt tccgagacca gagcctcaag cgctctcttg tgcacctgca cttccccact
4021 tggcctgagt taggcctgcc cgacagcccc agcaacttgc tgcgcttcat ccaggaggtg
4081 cacgcacatt acctgcatca gcggccgctg cacacgccca tcattgtgca ctgcagctct
4141 ggtgtgggcc gcacgggagc ctttgcactg ctctatgcag ctgtgcagga ggtggaggct
4201 gggaacggaa tccctgagct gcctcagctg gtgcggcgca tgcggcagca gagaaagcac
4261 atgctgcagg agaagctgca cctcaggttc tgctatgagg cagtggtgag acacgtggag
4321 caggtcctgc agcgccatgg tgtgcctcct ccatgcaaac ccttggccag tgcaagcatc
4381 agccagaaga accaccttcc tcaggactcc caggacctgg tcctcggtgg ggatgtgccc
4441 atcagctcca tccaggccac cattgccaag ctcagcattc ggcctcctgg ggggttggag
4501 tccccggttg ccagcttgcc aggccctgca gagcccccag gcctcccgcc agccagcctc
4561 ccagagtcta ccccaatccc atcttcctcc ccaccccccc tttcctcccc actacctgag
4621 gctccccagc ctaaggagga gccgccagtg cctgaagccc ccagctcggg gcccccctcc
4681 tcctccctgg aattgctggc ctccttgacc ccagaggcct tctccctgga cagctccctg
4741 cggggcaaac agcggatgag caagcataac tttctgcagg cccataacgg gcaagggctg
4801 cgggccaccc ggccctctga cgaccccctc agccttctgg atccactctg gacactcaac
4861 aagacctgaa caggttttgc ctacctggtc cttacactac atcatcatca tctcatgccc
4921 acctgcccac acccagcaga gcttctcagt gggcacagtc tcttactccc atttctgctg
4981 cctttggccc tgcctggccc agcctgcacc cctgtggggt ggaaatgtac tgcaggctct
5041 gggtcaggtt ctgctccttt atgggacccg acatttttca gctctttgct attgaaataa
5101 taaaccaccc tgttctgtg
//