LOCUS AK299771 2243 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ54938 complete cds, weakly similar to Mus
musculus transmembrane and tetratricopeptide repeat containing 1
(Tmtc1), mRNA.
ACCESSION AK299771
VERSION AK299771.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2243)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2243
/clone="OCBBF3000944"
/clone_lib="OCBBF3"
/db_xref="H-InvDB:HIT000494395"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 271..2046
/codon_start=1
/note="weakly similar to Mus musculus transmembrane and
tetratricopeptide repeat containing 1 (Tmtc1), mRNA"
/protein_id="BAH13125.1"
/transl_table=1
/translation="MGNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDT
LSFDWSMDAVPLLKTVCDWRNLHTVAFYTGLLLLAYYGLKSPSVDRECNGKTVTNGKQ
NANGHSCLSDVEYQNSETKSSFASKVENGIKNDVSQRTQLPSTENIVVLSLSLLIIPF
VPATNLFFYVGFVIAERVLYIPSMGFCLLITVGARALYVKVQKRFLKSLIFYATATLI
VFYGLKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALY
YRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEE
ARRTFLKCSEIPDENLKGPHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQKMP
RQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSE
AEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAH
MLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD
DVITQSNLRKLWNIMEKQGLKTSKT"
BASE COUNT 624 a 517 c 541 g 561 t
ORIGIN
1 aagctgggag gagaaggcgg cggaaggtgg agattgatgc ttctgttttt tgttgccgct
61 gctgccctcg cgctgggagc cgagccggag ggaaggcggt ggagagatga ttgcagagct
121 ggtgagcagc gctctggggc tcgccttgta tctcaacacc ctgagtgcgg atttctgcta
181 tgatgacaga ggaagaactt gtcgcttttc ctaagcatta gtttgttaat tttctgggat
241 tcctcccttt tgggtgcccg gttatactgg atgggaaaca aaccaccaag cttttccaac
301 tcggacaacc ccgctgctga ttcggacagc ctcctcaccc gcactctcac cttcttctac
361 ttgccaacca agaacctctg gctgttgcta tgtccagata ccctcagttt tgattggtca
421 atggatgctg tgcctctgct caaaacagtt tgtgactgga gaaacctaca cactgtggcc
481 ttctatactg gactccttct ccttgcctac tatggtttga agagcccgag cgtagacaga
541 gaatgcaatg ggaaaactgt aacaaatggc aagcagaatg caaatggaca tagctgcctt
601 tcagatgtgg agtaccagaa ctcagagact aagtccagct ttgcatccaa agtagaaaat
661 ggcattaaaa acgatgtatc acagagaacc cagcttcctt ctacggagaa cattgttgtt
721 ctgtctttat ctttgttaat catacccttt gttcctgcca cgaacctgtt tttctatgtc
781 ggctttgtaa ttgcagagcg agtattatat attcctagta tgggcttctg cctactgatt
841 acagtgggtg ctagagccct ttatgtcaaa gtccaaaagc ggttcctcaa gagcttgatt
901 ttttatgcta cagctacact aattgttttt tatggactca agactgcgat caggaatgga
961 gactggcaga atgaggaaat gctttataga tcagggataa aagtaaaccc agctaaagca
1021 tggggtaacc ttggaaatgt tctgaagagt cagagcaaaa tttctgaagc tgaaagcgcc
1081 tatagaaatg ctttgtacta ccgcagcaac atggctgaca tgctttataa tttagggcta
1141 cttctccagg agaacagcag gtttgcagaa gcactacatt attataaatt ggccattggg
1201 agcaggccta ccctggcttc tgcatattta aataccggta ttattctaat gaaccaagga
1261 aggacggaag aagcccgacg gacattctta aagtgttcgg agatcccaga tgaaaaccta
1321 aagggccctc atgcacacaa gagctctgtt accagttgtt tgtacaacct aggaaagctg
1381 tatcatgagc agggacacta tgaggaagcc cttagtgtat acaaggaagc aattcagaaa
1441 atgccaaggc agtttgcccc acagagcttg tacaacatga tgggtgaagc atatatgcgt
1501 ttaagcaaac tccccgaagc agagcattgg tatatggaat cactgagatc caagactgac
1561 cacatccctg ctcatctcac ctatgggaag ctgctagctc taacaggtcg taagagtgag
1621 gctgaaaagc tcttcttgaa ggctattgag ctggatccca ccaaaggaaa ctgttacatg
1681 cattatggtc agtttcttct ggaagaagct cgtctcatag aagcagctga gatggcaaaa
1741 aaagcagctg aactagacag cacagagttt gatgttgtct tcaatgctgc ccacatgctc
1801 agacaggcta gcctcaatga agcagctgag aagtattatg atctggcagc caggctgagg
1861 cctaattatc cggctgcttt gatgaacctg ggagccattc tgcacctcaa tggcagactc
1921 cagaaggccg aggccaacta cctgcgggcc ctgcagctca agccagacga tgtcatcaca
1981 cagtccaatc tccgcaaact gtggaacatc atggaaaaac aaggcttaaa gacttctaag
2041 acctgacaca ggaggcagaa gcccatcctc ctccattttt aaaagctggc ttccttagca
2101 gacagaactt cccagcagtg ctgtgacaag agctggtgtt agacttcaag accagggcag
2161 aggtcattga ggtcactacc gcttctggaa gaatccactt tgctgtaggc acagctgtta
2221 acaccaaaaa ggggaaagcc gga
//