LOCUS AK299744 2435 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58374 complete cds, highly similar to SLIT
and NTRK-like protein 5 precursor.
ACCESSION AK299744
VERSION AK299744.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2435)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2435
/clone="OCBBF2036648"
/clone_lib="OCBBF2"
/db_xref="H-InvDB:HIT000494368"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 240..2393
/codon_start=1
/note="highly similar to SLIT and NTRK-like protein 5
precursor"
/protein_id="BAG61637.1"
/transl_table=1
/translation="MGAGKHREGGGGDPTSLNGCADLIQRRTEISRDLDEVSKQELCP
RRLISDYEMRPQTPLSTTGYLHTTPASVNSVATSSSAVYKPPLKPPKGTRQPNKPRVR
PTSRQPSKDLGYSNYGPSIAYQTKSPVPLECPTACSCNLQISDLGLNVNCQERKIESI
AELQPKPYNPKKMYLTENYIAVVRRTDFLEATGLDLLHLGNNRISMIQDRAFGDLTNL
RRLYLNGNRIERLSPELFYGLQSLQYLFLQYNLIREIQSGTFDPVPNLQLLFLNNNLL
QAMPSGVFSGLTLLRLNLRSNHFTSLPVSGVLDQLKSLIQIDLHDNPWDCTCDIVGMK
LWVEQLKVGVLVDEVICKAPKKFAETDMRSIKSELLCPDYSDVVVSTPTPSSIQVPAR
TSAVTPAVRLNSTGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKR
RKKNQSDHTSTNNSDVSSFNMQYSVYGGGGGTGGHPHAHVHHRGPALPKVKTPAGHVY
EYIPHPLGHMCKNPIYRSREGNSVEDYKDLHELKVTYSSNHHLQQQQQPPPPPQQPQQ
QPPPQLQLQPGEEERRESHHLRSPAYSVSTIEPREDLLSPVQDADRFYRGILEPDKHC
STTPAGNSLPEYPKFPCSPAAYTFSPNYDLRRPHQYLHPGAGDSRLREPVLYSPPSAV
FVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF"
BASE COUNT 562 a 741 c 655 g 477 t
ORIGIN
1 gggggaattt gcatcggagg tgcgtttccc cgtcagaatg tcagcctccc caggctcatt
61 caactttatt ttctcaaatt tttggtctcc tttgctagca aggaggaggg ggaagggagt
121 gggttgagag gaagctcttc gacccttgct aactagaact gaattaaagt tgtaaacgct
181 ggagtttaat actggctgga ctgaatttgc aatgggcttt cagatggggt gggaggtgaa
241 tgggggcggg gaagcacagg gagggagggg gaggggaccc aacctcgctg aatggatgtg
301 cggatttgat ccagcggaga actgaaattt caagggactt ggacgaggta tccaagcagg
361 aactttgccc aaggagactt atttctgact acgagatgag gccgcagacg cctttgagca
421 ccacggggta tttacacacc accccggcgt cagtgaattc tgtggccact tcttcctctg
481 ctgtttacaa accccctttg aagcccccta aggggactcg ccaacccaac aagcccaggg
541 tgcgccccac ctctcggcag ccctctaagg acttgggcta cagcaactat ggccccagca
601 tcgcctatca gaccaaatcc ccggtgcctt tggagtgtcc caccgcgtgc tcttgcaacc
661 tgcagatctc tgatctgggc ctcaacgtaa actgccagga gcgaaagatc gagagcatcg
721 ctgaactgca gcccaagccc tacaatccca agaaaatgta tctgacagag aactacatcg
781 ctgtcgtgcg caggacagac ttcctggagg ccacggggct ggacctcctg cacctgggga
841 ataaccgcat ctcgatgatc caggaccgcg ctttcgggga tctcaccaac ctgaggcgcc
901 tctacctgaa tggcaacagg atcgagaggc tgagcccgga gttattctat ggcctgcaga
961 gcctgcagta tctcttcctc cagtacaatc tcatccgcga gattcagtct ggaacttttg
1021 acccggtccc aaacctccag ctgctattct tgaataacaa cctcctgcag gccatgccct
1081 caggcgtctt ctctggcttg accctcctca ggctaaacct gaggagtaac cacttcacct
1141 ccttgccagt gagtggagtt ttggaccagc tgaagtcact catccaaatc gacctgcatg
1201 acaatccttg ggattgtacc tgtgacattg tgggcatgaa gctgtgggtg gagcagctca
1261 aagtgggcgt cctagtggac gaggtgatct gtaaggcgcc caaaaaattc gctgagaccg
1321 acatgcgctc cattaagtcg gagctgctgt gccctgacta ttcagatgta gtagtttcca
1381 cgcccacacc ctcctctatc caggtccctg cgaggaccag cgccgtgact cctgcggtcc
1441 ggttgaatag caccggggcc cccgcgagct tgggcgcagg cggaggggcg tcgtcggtgc
1501 ccttgtctgt gttaattctc agcctcctgc tggttttcat catgtccgtc ttcgtggccg
1561 ccgggctctt cgtgctggtc atgaagcgca ggaagaagaa ccagagcgac cacaccagca
1621 ccaacaactc cgacgtgagc tcctttaaca tgcagtacag cgtgtacggc ggcggcggcg
1681 gcacgggcgg ccacccacac gcgcacgtgc atcaccgcgg gcccgcgctg cccaaggtga
1741 agacgcccgc gggccacgtg tatgaataca tcccccaccc actgggccac atgtgcaaaa
1801 accccatcta ccgctcccga gagggcaact ccgtagagga ttacaaagac ctgcacgagc
1861 tcaaggtcac ctacagcagc aaccaccacc tgcagcagca gcagcagccg ccgccgccac
1921 cgcagcagcc acagcagcag cccccgccgc agctgcagct gcagcccggg gaggaggaga
1981 ggcgggaaag ccaccacttg cggagccccg cctacagcgt cagcaccatc gagccccggg
2041 aggacctgct gtcgccggtg caggacgccg accgctttta caggggcatt ttagaaccag
2101 acaaacactg ctccaccacc cccgccggca atagcctccc ggaatatccc aaattcccgt
2161 gcagccccgc tgcttacact ttctccccca actatgacct gagacgcccc catcagtatt
2221 tgcacccggg ggcaggggac agcaggctac gggaaccggt gctctacagc cccccgagtg
2281 ctgtctttgt agaacccaac cggaacgaat atctggagtt aaaagcaaaa ctaaacgttg
2341 agccggacta cctcgaagtg ctggaaaaac agaccacgtt tagccagttc taaaagcaaa
2401 gaaactctct tggagctttt gcatttaaaa caaac
//