LOCUS AK299687 2359 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ61370 complete cds, highly similar to
Synphilin-1.
ACCESSION AK299687
VERSION AK299687.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2359)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2359
/clone="OCBBF2027744"
/clone_lib="OCBBF2"
/db_xref="H-InvDB:HIT000494311"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 468..1901
/codon_start=1
/note="highly similar to Synphilin-1"
/protein_id="BAH13102.1"
/transl_table=1
/translation="MQEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQ
NHAGEKPSQSAERQGHTLCSRYLVVVETCMSLASQVVKLTKQLKEQTVERVTLQNQLQ
QFLEAQKSEGKSLPSSPSSPSSPASRKSQWKSPDADDDSVAKSKPGVQEGIQVLGSLS
ASSRARPKAKDEDSDKILRQLLGKEISENVCTQEKLSLEFQDAQASSRNSKKIPLEKR
ELKLARLRQLMQRSLSESDTDSNNSEDPKTTPVRKADRPRPQPIVESVESMDSAESLH
LMIKKHTLASGGRRFPFSIKASKSLDGHSPSPTSESSEPDLESQYPGSGSIPPNQPSG
DPQQPSPDSTAAQKVATSPKSALKSPSSKRRTSQNLKLRVTFEEPVVQMEQPSLELNG
EKDKDKGRTLQRTSTSNESGDQLKRPFGAFRSIMETLSGNQNNNNNYQAANQLKTSTL
PLTSLGRKTDAKGNPASSASKGKNKAA"
BASE COUNT 734 a 549 c 556 g 520 t
ORIGIN
1 aaagtgggaa gcgcggacaa aaagtaggcg gggaggagag gagagcccca gctggggaaa
61 agcaacggca gtcgaggtaa aaagagcgaa aggaatttat aagtatttga ccgtactcaa
121 aatgtgcaag gaagaataat ggaagcccct gaataccttg atttggatga aattgacttt
181 agtgatgaca tatcttattc agtcacatca ctcaagacga tcccagaact gtgccgaaga
241 tgtgatacgc aaaacgaaga cagatcagaa tggtcagttg gagtgcgtac gctggatggt
301 gagcgaaaca gaagccattg cagaactgag ttgttctaag gattttccaa gccttattca
361 ttacgcaggt tgctatggcc agtcagagat tcaaggattt tcaattcaca tctgaatgag
421 aattttctct tgctacggaa aagattcttc tgtggcttct tcagtttatg caagaacagg
481 gcatctcgtt ggatgaagta gaccaggatg gcaacagtgc cgttcacgta gcctcacagc
541 atggctacct tggatgcata cagaccttgg ttgaatatgg agcaaatgtc accatgcaga
601 accacgctgg ggaaaagccc tcccagagcg ccgagcggca ggggcacacc ctgtgctcca
661 ggtacctggt ggtggtggag acctgcatgt cgctggcctc tcaagtggtg aagttaacca
721 agcagctaaa ggaacaaaca gtagaacgtg tcacgctgca gaaccaactc caacaatttc
781 tagaagccca gaaatcagag ggcaagtcac tcccttcttc acccagttca ccatcctcac
841 ctgcctccag aaagtcccag tggaaatctc cagatgcaga tgatgattct gtagccaaaa
901 gcaagccagg agtccaagag gggattcagg ttcttggaag cctgtcagcc tccagccggg
961 ctagacccaa agcaaaagat gaagattctg ataaaatctt acgccagtta ttgggaaagg
1021 aaatctcaga aaatgtctgc acccaggaaa aactgtcctt ggaattccag gatgctcagg
1081 cttcctctag aaattctaaa aagatcccac tggagaagag ggaactgaag ttagccaggc
1141 tgagacagct gatgcagagg tcactgagtg agtctgacac agactccaac aactctgagg
1201 accccaagac taccccagtg aggaaggctg accgaccgag gccgcagccc attgtagaaa
1261 gcgtagagag tatggacagc gcagaaagcc tgcacctgat gattaagaaa cacaccttgg
1321 catcaggggg acgcaggttt cctttcagca tcaaggcctc caaatccctg gatggccaca
1381 gcccatctcc cacctcagag agcagcgaac cagacttaga atcccagtat ccaggctcag
1441 ggagtattcc tccaaaccag ccctctggtg accctcagca gcccagccct gacagtactg
1501 ctgcccagaa agttgccaca agtcccaaga gtgccctcaa gtctccatct tccaagcgta
1561 ggacatctca gaacttaaaa ctgagagtta cctttgagga gcctgtggtg cagatggagc
1621 agcctagcct tgaactgaat ggagaaaagg acaaagataa gggcaggact ctccagcgga
1681 cctccacaag taacgaatcg ggggatcaac tgaaaaggcc ttttggagcc tttcgatcta
1741 tcatggagac actaagtggc aaccaaaaca ataataataa ctaccaggca gccaaccagc
1801 tgaaaacctc tacattgccc ttgacctcac ttgggaggaa gacagatgcc aagggaaacc
1861 ctgccagctc cgctagcaaa ggaaagaata aggcagcata atgacatcaa tagaaaaatg
1921 aagaaatcct acagcataaa gcacattgct gagccagagt caaaagaact cttcttgtaa
1981 atcacttttt aaattttctc tcactgatgc cctttggaaa ttattggaaa tttctggact
2041 atcctctttg gaaagagaac catgaaaaca atgcctcacc agcagaagaa cagaatatca
2101 ggatgcctta aatttatagt agtagactgt aaaagattca ttctggggtg atatctgtat
2161 atataacttg tttttttaaa agatgccgtt taaaagcatg attgggaaaa tgtatgtttt
2221 ttaagagtag attgattcac cctacccaca ggacattcac caagccactg ataccatttt
2281 atatttcatc aattgcatga gtatttgcta atgttgattg aacctccctt tccccataat
2341 gtgggcagat ttggctcag
//